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BaseInfo

ncRNA ID	novel_zma_miR1025
Species	Zea mays
Class	miRNA
Genome position	Chr4:20551509-20551596 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089712
Length	22
Mature sequence(if miRNA)	1 - AUAUGGAUUAAAGGGGAUUGAG - 22
Stem-loop(if miRNA)	--AUAU     A          -----------A        AAA   CU       GGAUU AAGGGGAUUG            GUGGGUUU   UCU  A       ||||| ||||||||||            ||||||||   |||       CCUAA UUCUCCUAAC            UACCUAAA   GGA  G GAUAAU     C          ACUCCUUAAUCA        -AC   AC
Stem-loop sequence	AUAUGGAUUAAAGGGGAUUGAGUGGGUUUAAAUCUCUAGCAAGGCAAAAUCCAUACUAAUUCCUCACAAUCCUCUUCAAUCCUAAUAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU957719.1	ncRNA:22   GAGUUAGGGGAAAUUAGGUAUA   1   ||=||||||||*|||||||||| targets:2130   CUUAAUCCCCUCUAAUCCAUAU   2151 Target Full Sequence	1.5	Zea mays clone 1612818 transport inhibitor response 1 protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154659.2	ncRNA:22   GAGUUAGGGGAAAUUAGGUAUA   1   ||=||||||||*|||||||||| targets:2129   CUUAAUCCCCUCUAAUCCAUAU   2150 Target Full Sequence	1.5	Zea mays transport inhibitor response 1 protein (LOC100281739), mRNA	NA	coding protein	psRNATarget
BT055069.1	ncRNA:22   GAGUUAGGGGAAAUUAGGUAUA   1   *|||||||||||*||||||||| targets:975   AUCAAUCCCCUUCAAUCCAUAU   996 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0132H13 mRNA, complete cds	NA	coding protein	psRNATarget
BT041454.1	ncRNA:22   GAGUUAGGGGAAAUUAGGUAUA   1   *|||||||||||*||||||||| targets:1496   AUCAAUCCCCUUCAAUCCAUAU   1517 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0061I22 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001148011.2	ncRNA:22   GAGUUAGGGGAAAUUAGGUAUA   1   *|||||||||||*||||||||| targets:1496   AUCAAUCCCCUUCAAUCCAUAU   1517 Target Full Sequence	1.5	Zea mays uncharacterized LOC100273594 (AY105910), mRNA	NA	coding protein	psRNATarget
AY105910.1	ncRNA:22   GAGUUAGGGGAAAUUAGGUAUA   1   *|||||||||||*||||||||| targets:1482   AUCAAUCCCCUUCAAUCCAUAU   1503 Target Full Sequence	1.5	Zea mays PCO106969 mRNA sequence	NA	coding protein	psRNATarget
BT040193.1	ncRNA:22   GAGUUAGGGGAAAUUAGGUAUA   1   *|||||||||||*||||||||| targets:1464   AUCAAUCCCCUUCAAUCCAUAU   1485 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0070L08 mRNA, complete cds	NA	coding protein	psRNATarget
BT064472.1	ncRNA:22   GAGUUAGGGGAAAUUAGGUAUA   1   *|||||||||||*||||||||| targets:1420   AUCAAUCCCCUUCAAUCCAUAU   1441 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0172D22 mRNA, complete cds	NA	coding protein	psRNATarget
EU972046.1	ncRNA:22   GAGUUAGGGGAAAUUAGGUAUA   1   *||||||||||*|||||||||| targets:783   AUCAAUCCCCUCUAAUCCAUAU   804 Target Full Sequence	1.5	Zea mays clone 373861 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:22   GAGUUAGGGGAAAUUAGGUAUA   1   *||||||=||||*||||||||| targets:3119   AUCAAUCUCCUUCAAUCCAUAU   3140 Target Full Sequence	2.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget
XM_008658331.2	ncRNA:22   GAGUUAGGGGAAAUUAGGUAUA   1   *||=||||||||*||||||||| targets:1697   AUCGAUCCCCUUCAAUCCAUAU   1718 Target Full Sequence	2.5	PREDICTED: Zea mays putative protein phosphatase 2C 46 (LOC103635969), mRNA	NA	coding protein	psRNATarget