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BaseInfo

ncRNA ID novel_zma_miR1020
Species Zea mays
Class miRNA
Genome position Chr4:195003395-195003545 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR1997865;SRR1997866;SRR2089701;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - ACCGGACUGUCCGGUGUGCAUCGA - 24
Stem-loop(if miRNA) --       -         UG     A  U        AG   --A  GU ---   CG     A  -   GG      G
  ACCGGAC UGUCCGGUG  CAUCG AC GUCCGGUG  CCA   CG  C   GGC  GGCCA CG GUC  CCGCGC A
  ||||||| |||||||||  ||||| || ||||||||  |||   ||  |   |||  ||||| || |||  |||||| U
  UGGCCUG ACAGGCCAC  GUGGC UG CAGGCCAC  GGU   GC  G   CCG  CCGGU GC CAG  GGCGCG C
CG       U         GU     C  U        GG   AAG  UG CAA   AG     -  A   --      U
Stem-loop sequence ACCGGACUGUCCGGUGUGCAUCGAACUGUCCGGUGAGCCAACGGUCGGCCGGGCCAACGGUCGGCCGCGCGAUCUGCGCGGGACACGUGGCCGAGCCAACGGUCGGAAUGGGGCACCGGACUGUCCGGUGUGCACCGGACAUGUCCGGUGC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ242178.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:108   CCGGUGCACACCGGACAGUCCGGU   131

0.0 Sequence 8173 from Patent EP2985353 NA coding protein psRNATarget
HI410048.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:108   CCGGUGCACACCGGACAGUCCGGU   131

0.0 Sequence 8173 from Patent EP2074227 NA coding protein psRNATarget
JB170509.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:108   CCGGUGCACACCGGACAGUCCGGU   131

0.0 Sequence 8173 from Patent EP2559767 NA coding protein psRNATarget
BT068112.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:469   CCGGUGCACACCGGACAGUCCGGU   492

0.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT068112.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:599   CCGGUGCACACCGGACAGUCCGGU   622

0.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT068112.2
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:723   CCGGUGCACCACCGGACAGUCCGGU   747

2.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:741   CCGGUGCACACCGGACAGUCCGGU   764

0.0 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  |||=-|==||||||||||||||||
targets:585   UCGG-GUGCACCGGACAGUCCGGU   607

2.0 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:621   CCGGUGCACACCGGACAGUCCGGU   644

0.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:735   CCGGUGCACACCGGACAGUCCGGU   758

0.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:838   CCGGUGCACACCGGACAGUCCGGU   861

0.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
BT061141.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:621   CCGGUGCACACCGGACAGUCCGGU   644

0.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:735   CCGGUGCACACCGGACAGUCCGGU   758

0.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:838   CCGGUGCACACCGGACAGUCCGGU   861

0.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:713   CCGGUGCACACCGGACAGUCCGGU   736

0.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  |=|--||=||||||||||||||||
targets:601   UUG--GCGCACCGGACAGUCCGGU   622

1.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:713   CCGGUGCACACCGGACAGUCCGGU   736

0.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  |=|--||=||||||||||||||||
targets:601   UUG--GCGCACCGGACAGUCCGGU   622

1.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
BT061123.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:282   CCGGUGCACACCGGACAGUCCGGU   305

0.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  |||=-|==||||||||||||||||
targets:137   UCGG-GUGCACCGGACAGUCCGGU   159

2.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:598   CCGGUGCACACCGGACAGUCCGGU   621

0.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:696   CCGGUGCACACCGGACAGUCCGGU   719

0.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:799   CCGGUGCACCACCGGACAGUCCGGU   823

2.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  |||=-||=||||||||||||||||
targets:484   UCGG-GCGCACCGGACAGUCCGGU   506

1.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
BT066811.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:598   CCGGUGCACACCGGACAGUCCGGU   621

0.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:696   CCGGUGCACACCGGACAGUCCGGU   719

0.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:799   CCGGUGCACCACCGGACAGUCCGGU   823

2.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  |||=-||=||||||||||||||||
targets:484   UCGG-GCGCACCGGACAGUCCGGU   506

1.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT061124.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:446   CCGGUGCACACCGGACAGUCCGGU   469

0.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
BT061124.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:560   CCGGUGCACACCGGACAGUCCGGU   583

0.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
BT061124.2
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:662   CCGGUGCACCACCGGACAGUCCGGU   686

2.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:446   CCGGUGCACACCGGACAGUCCGGU   469

0.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:560   CCGGUGCACACCGGACAGUCCGGU   583

0.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:662   CCGGUGCACCACCGGACAGUCCGGU   686

2.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
EU940831.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:294   ACGGUGCACACCGGACAGUCCGGU   317

0.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
EU940831.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:408   CCGGUGCACACCGGACAGUCCGGU   431

0.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
EU940831.1
ncRNA:24   AG-CUACGUG-UGGCCUGUCAGGCCA   1
  ||-|=|||||-|||||||||||||||
targets:531   UCUGGUGCACCACCGGACAGUCCGGU   556

2.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
EU940845.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:1398   CCGGUGCACACCGGACAGUCCGGU   1421

0.0 Zea mays clone 1163633 mRNA sequence NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:4493   CCGGUGCACACCGGACAGUCCGGU   4516

0.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||||||
targets:4608   CCGGUGCACACCGGACAGUCCGGU   4631

0.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:4710   CCGGUGCACCACCGGACAGUCCGGU   4734

2.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
HI409351.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||=|||||||||||||||||
targets:29   CCGGUGUACACCGGACAGUCCGGU   52

1.0 Sequence 7476 from Patent EP2074227 NA coding protein psRNATarget
LQ241481.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||=|||||||||||||||||
targets:29   CCGGUGUACACCGGACAGUCCGGU   52

1.0 Sequence 7476 from Patent EP2985353 NA coding protein psRNATarget
JB169812.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||=|||||||||||||||||
targets:29   CCGGUGUACACCGGACAGUCCGGU   52

1.0 Sequence 7476 from Patent EP2559767 NA coding protein psRNATarget
BT086229.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=|||||||=||||||||||||
targets:532   CCGGUGCACACUGGACAGUCCGGU   555

1.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
BT086229.2
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=||*||-|||||||||||||||
targets:646   CCGGUGAACCACCGGACAGUCCGGU   670

3.0 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
EU940974.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=|||||||=||||||||||||
targets:2654   CCGGUGCACACUGGACAGUCCGGU   2677

1.5 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
EU940974.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||||||=|||
targets:2768   CCGGUGCACACCGGACAGUCUGGU   2791

1.5 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
EZ109126.1
ncRNA:24   AGCUAC-GUGUGGCCUGUCAGGCCA   1
  |=||||-|=||||||||||||||||
targets:172   UUGAUGGCGCACCGGACAGUCCGGU   196

3.0 TSA: Zea mays contig44785, mRNA sequence NA coding protein psRNATarget
EU950973.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||==||||||||||||||||
targets:181   CCGGUGUGCACCGGACAGUCCGGU   204

2.0 Zea mays clone 677173 mRNA sequence NA coding protein psRNATarget
JB170644.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGGU   53

2.0 Sequence 8308 from Patent EP2559767 NA coding protein psRNATarget
HI408938.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGGU   53

2.0 Sequence 7063 from Patent EP2074227 NA coding protein psRNATarget
LQ241068.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGGU   53

2.0 Sequence 7063 from Patent EP2985353 NA coding protein psRNATarget
HI410183.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGGU   53

2.0 Sequence 8308 from Patent EP2074227 NA coding protein psRNATarget
HI409038.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGGU   53

2.0 Sequence 7163 from Patent EP2074227 NA coding protein psRNATarget
JB169499.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGGU   53

2.0 Sequence 7163 from Patent EP2559767 NA coding protein psRNATarget
JB169399.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGGU   53

2.0 Sequence 7063 from Patent EP2559767 NA coding protein psRNATarget
LQ241168.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGGU   53

2.0 Sequence 7163 from Patent EP2985353 NA coding protein psRNATarget
LQ242313.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGGU   53

2.0 Sequence 8308 from Patent EP2985353 NA coding protein psRNATarget
LQ241570.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGGU   53

2.0 Sequence 7565 from Patent EP2985353 NA coding protein psRNATarget
JB169901.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGGU   53

2.0 Sequence 7565 from Patent EP2559767 NA coding protein psRNATarget
HI409440.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:29   CCGGUGCACCACCGGACAGUCCGGU   53

2.0 Sequence 7565 from Patent EP2074227 NA coding protein psRNATarget
EZ106959.1
ncRNA:24   AGCUAC-GUGUGGCCUGUCAGGCCA   1
  *||=||-||||||||||||||||||
targets:93   CCGGUGGCACACCGGACAGUCCGGU   117

2.0 TSA: Zea mays contig42617, mRNA sequence NA coding protein psRNATarget
BT083610.2
ncRNA:24   AGCUAC-GUGUGGCCUGUCAGGCCA   1
  *||=||-||||||||||||||||||
targets:796   CCGGUGGCACACCGGACAGUCCGGU   820

2.0 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT083610.2
ncRNA:24   AGC-UAC-GUGUGGCCUGUCAGGCCA   1
  |||-|||-|=||||||||||||||||
targets:471   UCGCAUGGCGCACCGGACAGUCCGGU   496

3.0 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT083610.2
ncRNA:24   AGCUAC-GUGUGGCCUGUCAGGCCA   1
  *||*||-||||||||||||||||||
targets:694   CCGCUGGCACACCGGACAGUCCGGU   718

2.0 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT038885.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||||||=|-|||||||||||||||
targets:1026   CCGAUGCGCCACCGGACAGUCCGGU   1050

3.0 Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds NA coding protein psRNATarget
BT066461.2
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||||-|||||||||||||||
targets:849   CCGGUGCACCACCGGACAGUCCGGU   873

2.0 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
BT066461.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||*|||||||||
targets:610   CCGGUGCACACCGGUCAGUCCGGU   633

1.5 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
EU968231.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||||||=|-|||||||||||||||
targets:1397   CCGAUGCGCCACCGGACAGUCCGGU   1421

3.0 Zea mays clone 317172 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
HI409909.1
ncRNA:24   AG-CUACGUG-UGGCCUGUCAGGCCA   1
  ||-|=|||||-|||||||||||||||
targets:30   UCUGGUGCACCACCGGACAGUCCGGU   55

2.0 Sequence 8034 from Patent EP2074227 NA coding protein psRNATarget
JB170370.1
ncRNA:24   AG-CUACGUG-UGGCCUGUCAGGCCA   1
  ||-|=|||||-|||||||||||||||
targets:30   UCUGGUGCACCACCGGACAGUCCGGU   55

2.0 Sequence 8034 from Patent EP2559767 NA coding protein psRNATarget
LQ242039.1
ncRNA:24   AG-CUACGUG-UGGCCUGUCAGGCCA   1
  ||-|=|||||-|||||||||||||||
targets:30   UCUGGUGCACCACCGGACAGUCCGGU   55

2.0 Sequence 8034 from Patent EP2985353 NA coding protein psRNATarget
LQ241966.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||*|||||||
targets:34   CCGGUGCACACCGGACUGUCCGGU   57

1.5 Sequence 7961 from Patent EP2985353 NA coding protein psRNATarget
HI409836.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||*|||||||
targets:34   CCGGUGCACACCGGACUGUCCGGU   57

1.5 Sequence 7961 from Patent EP2074227 NA coding protein psRNATarget
JB170297.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||*|||||||
targets:34   CCGGUGCACACCGGACUGUCCGGU   57

1.5 Sequence 7961 from Patent EP2559767 NA coding protein psRNATarget
EZ066204.1
ncRNA:24   AGC-UAC-GUGUGGCCUGUCAGGCCA   1
  |||-|||-|=||||||||||||||||
targets:87   UCGCAUGGCGCACCGGACAGUCCGGU   112

3.0 TSA: Zea mays contig01838, mRNA sequence NA coding protein psRNATarget
BT016820.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||||||||||||*|||||||
targets:202   CCGGUGCACACCGGACUGUCCGGU   225

1.5 Zea mays clone Contig653 mRNA sequence NA coding protein psRNATarget
BT016820.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  **|=*|=|||||||||*|||||||
targets:5   GAGGGGUACACCGGACUGUCCGGU   28

2.5 Zea mays clone Contig653 mRNA sequence NA coding protein psRNATarget
NM_001175715.1
ncRNA:24   AGCU-AC-GUGUGGCCUGUCAGGCCA   1
  ||||-||-|=||||||||||||||||
targets:487   UCGAGUGGCGCACCGGACAGUCCGGU   512

3.0 Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA NA coding protein psRNATarget
NM_001175715.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *|***||=||||||||||||||||
targets:778   GCCUGGCGCACCGGACAGUCCGGU   801

1.0 Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA NA coding protein psRNATarget
BT066013.2
ncRNA:24   AGCU-AC-GUGUGGCCUGUCAGGCCA   1
  ||||-||-|=||||||||||||||||
targets:487   UCGAGUGGCGCACCGGACAGUCCGGU   512

3.0 Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds NA coding protein psRNATarget
BT066013.2
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *|***||=||||||||||||||||
targets:778   GCCUGGCGCACCGGACAGUCCGGU   801

1.0 Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds NA coding protein psRNATarget
NM_001349964.1
ncRNA:24   AGCUACGUG-UGGCCUGUCAGGCCA   1
  *||=|||=|-|||||||||||||||
targets:2991   CCGGUGCGCCACCGGACAGUCCGGU   3015

3.0 Zea mays uncharacterized LOC100278112 (IDP592), mRNA NA coding protein psRNATarget
EU948808.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||=|||||||||*|||||||
targets:523   CCGGUGUACACCGGACUGUCCGGU   546

2.5 Zea mays clone 385792 mRNA sequence NA coding protein psRNATarget
NM_001176828.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||=|||||||||*|||||||
targets:719   CCGGUGUACACCGGACUGUCCGGU   742

2.5 Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA NA coding protein psRNATarget
BT069634.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||=|||||||||*|||||||
targets:719   CCGGUGUACACCGGACUGUCCGGU   742

2.5 Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds NA coding protein psRNATarget
HI410010.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||=|||||||||*|||||||
targets:116   CCGGUGUACACCGGACUGUCCGGU   139

2.5 Sequence 8135 from Patent EP2074227 NA coding protein psRNATarget
LQ242140.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||=|||||||||*|||||||
targets:116   CCGGUGUACACCGGACUGUCCGGU   139

2.5 Sequence 8135 from Patent EP2985353 NA coding protein psRNATarget
JB170471.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||=|||||||||*|||||||
targets:116   CCGGUGUACACCGGACUGUCCGGU   139

2.5 Sequence 8135 from Patent EP2559767 NA coding protein psRNATarget
BT069074.2
ncRNA:24   AGCUACGU-GUGGCCUGUCAGGCCA   1
  *||=|||*-||||||||||||||||
targets:679   CCGGUGCUUCACCGGACAGUCCGGU   703

3.0 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
BT036301.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  *||=||=|||||||||*|||||||
targets:826   CCGGUGUACACCGGACUGUCCGGU   849

2.5 Zea mays full-length cDNA clone ZM_BFb0105P13 mRNA, complete cds NA coding protein psRNATarget
LQ241540.1
ncRNA:24   AGCU-AC-GUGUGGCCUGUCAGGCCA   1
  ||*|-||-||||||||||||||||||
targets:8   UCCACUGGCACACCGGACAGUCCGGU   33

2.0 Sequence 7535 from Patent EP2985353 NA coding protein psRNATarget
HI409410.1
ncRNA:24   AGCU-AC-GUGUGGCCUGUCAGGCCA   1
  ||*|-||-||||||||||||||||||
targets:8   UCCACUGGCACACCGGACAGUCCGGU   33

2.0 Sequence 7535 from Patent EP2074227 NA coding protein psRNATarget
JB169871.1
ncRNA:24   AGCU-AC-GUGUGGCCUGUCAGGCCA   1
  ||*|-||-||||||||||||||||||
targets:8   UCCACUGGCACACCGGACAGUCCGGU   33

2.0 Sequence 7535 from Patent EP2559767 NA coding protein psRNATarget
U41079.1
ncRNA:24   AGCUAC-GUGUGGCCUGUCAGGCCA   1
  *||=||-|*||||||||||||||||
targets:23   CCGGUGACUCACCGGACAGUCCGGU   47

3.0 Zea mays copia-type retroelement PREM-2, partial sequence NA coding protein psRNATarget
JB170393.1
ncRNA:24   AG-CUAC-GUGUGGCCUGUCAGGCCA   1
  ||-|=||-|*||||||||||||||||
targets:27   UCUGGUGGCCCACCGGACAGUCCGGU   52

3.0 Sequence 8057 from Patent EP2559767 NA coding protein psRNATarget
LQ242062.1
ncRNA:24   AG-CUAC-GUGUGGCCUGUCAGGCCA   1
  ||-|=||-|*||||||||||||||||
targets:27   UCUGGUGGCCCACCGGACAGUCCGGU   52

3.0 Sequence 8057 from Patent EP2985353 NA coding protein psRNATarget
HI409932.1
ncRNA:24   AG-CUAC-GUGUGGCCUGUCAGGCCA   1
  ||-|=||-|*||||||||||||||||
targets:27   UCUGGUGGCCCACCGGACAGUCCGGU   52

3.0 Sequence 8057 from Patent EP2074227 NA coding protein psRNATarget
BT042818.1
ncRNA:24   AGCUACGUGUGGCCUGUCAGGCCA   1
  ***|*||=||||||||*|||||||
targets:830   GGCAGGCGCACCGGACUGUCCGGU   853

2.5 Zea mays full-length cDNA clone ZM_BFc0047A15 mRNA, complete cds NA coding protein psRNATarget
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