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BaseInfo

ncRNA ID	osa-miR2118k
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:21656944-21657120 [-]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	39 - UUCCUGAUGCCUCUCAUUCCUA - 60
Stem-loop(if miRNA)	---           AAAGA        C     U            -C   GA        -CU     CUAUUG   -      G GCAAGCCA   GGAAGAGGAAG     GAGUAUCU AGAAU GUGGGAAUGAGA  CAU  AGGAAAGC   AAGCU      UCC CCUCUA U ||||||||   |||||||||||     |||||||| ||||| ||||||||||||  |||  ||||||||   |||||      ||| |||||| CGUUCGGU   CCUUCUCCUUC     CUCGUGGA UCUUG UAUCCUUACUCU  GUA  UCCUUUUG   UUUGA      AGG GGAGGU A         UUU           -----        U     U            CC   -G        UAC     -UUCAA   U      U
Stem-loop sequence	GCAAGCCAGGAAGAGGAAGAAAGAGAGUAUCUCAGAAUUGUGGGAAUGAGACCAUGAAGGAAAGCCUAAGCUCUAUUGUCCCCUCUAGUAUUGGAGGUGGAAACUUAGUUUCAUGUUUUCCUGAUGCCUCUCAUUCCUAUUGUUCUUAGGUGCUCCUUCCUCUUCCUUUUGGCUUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK068680.1	ncRNA:22   AUCCUUACUCUCCGUAGUCCUU   1   ||||||||=||||||||||||| targets:352   UAGGAAUGGGAGGCAUCAGGAA   373 Target Full Sequence	1.0	Oryza sativa Japonica Group cDNA clone:J013158G01, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"; Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH; Genome Res. 19:1429-1440(2009).