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BaseInfo

ncRNA ID	novel_zma_miR1017
Species	Zea mays
Class	miRNA
Genome position	Chr4:16087420-16087622 [+]
Reference genome	RefGen_v4
Source	SRR2089710
Length	21
Mature sequence(if miRNA)	1 - UCUUAAAUAUAUGACGUCGUU - 21
Stem-loop(if miRNA)	--                UC             A    -A          C               AAUCA    UUAUCAUUUGUUUUAUCACUUAAGGUAG   UCUUAAAUAUAUGACG  GUUGACUUUUUUU AAAA  UUUGACUACU GUCUUAUUUAAAAUA     UGAG                            U   ||||||||||||||||  ||||||||||||| ||||  |||||||||| |||||||||||||||     ||||                            U   AGAAUUUAUAUACUGC  CAACUGAAAAAAA UUUU  AAACUGGUGA CAGAAUAAGUUUUAU     AUAA                            U CA                UA             G    CG          A               ---GA    GCUUUUAUAUUUUAAAAUUCGGUAUGAG
Stem-loop sequence	UCUUAAAUAUAUGACGUCGUUGACUUUUUUUAAAAAAUUUGACUACUCGUCUUAUUUAAAAUAAAUCAUGAGUUAUCAUUUGUUUUAUCACUUAAGGUAGUUUGAGUAUGGCUUAAAAUUUUAUAUUUUCGAAUAAGUAUUUUGAAUAAGACAAGUGGUCAAAGCUUUUGAAAAAAAGUCAACAUCGUCAUAUAUUUAAGAAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235538.1	ncRNA:21   UUGCUGCAGUAUAUAAAUUCU   1   ||||==||||||||||||||| targets:201   AACGGUGUCAUAUAUUUAAGA   221 Target Full Sequence	2.0	Sequence 1533 from Patent EP2985353	NA	coding protein	psRNATarget
HI403408.1	ncRNA:21   UUGCUGCAGUAUAUAAAUUCU   1   ||||==||||||||||||||| targets:201   AACGGUGUCAUAUAUUUAAGA   221 Target Full Sequence	2.0	Sequence 1533 from Patent EP2074227	NA	coding protein	psRNATarget
JB163869.1	ncRNA:21   UUGCUGCAGUAUAUAAAUUCU   1   ||||==||||||||||||||| targets:201   AACGGUGUCAUAUAUUUAAGA   221 Target Full Sequence	2.0	Sequence 1533 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235428.1	ncRNA:21   UUGCUGCAGUAUAUAAAUUCU   1   ||||==||||||||||||||| targets:204   AACGGUGUCAUAUAUUUAAGA   224 Target Full Sequence	2.0	Sequence 1423 from Patent EP2985353	NA	coding protein	psRNATarget
JB163759.1	ncRNA:21   UUGCUGCAGUAUAUAAAUUCU   1   ||||==||||||||||||||| targets:204   AACGGUGUCAUAUAUUUAAGA   224 Target Full Sequence	2.0	Sequence 1423 from Patent EP2559767	NA	coding protein	psRNATarget
HI403298.1	ncRNA:21   UUGCUGCAGUAUAUAAAUUCU   1   ||||==||||||||||||||| targets:204   AACGGUGUCAUAUAUUUAAGA   224 Target Full Sequence	2.0	Sequence 1423 from Patent EP2074227	NA	coding protein	psRNATarget
EU946212.1	ncRNA:21   UUGCUGCAGUAUAUAAAUUCU   1   |||*|||||||||||||||*| targets:99   AACAACGUCAUAUAUUUAAAA   119 Target Full Sequence	2.5	Zea mays clone 300970 mRNA sequence	NA	coding protein	psRNATarget
NM_001139077.1	ncRNA:21   UUGCUGCAGUAUAUAAAUUCU   1   **||=|||||*|||||||||| targets:1256   UCCGGCGUCAAAUAUUUAAGA   1276 Target Full Sequence	2.5	Zea mays uncharacterized LOC100194014 (LOC100194014), mRNA	NA	coding protein	psRNATarget
BT036430.1	ncRNA:21   UUGCUGCAGUAUAUAAAUUCU   1   **||=|||||*|||||||||| targets:1256   UCCGGCGUCAAAUAUUUAAGA   1276 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0113D20 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008654602.2	ncRNA:21   UUGCUGCAGUAUAUAAAUUCU   1   |||||*|*||||||||||||* targets:2703   AACGAGGACAUAUAUUUAAGC   2723 Target Full Sequence	3.0	PREDICTED: Zea mays ABC transporter G family member 11 (LOC103632890), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541368.1	ncRNA:21   UUGCUGCAGUAUAUAAAUUCU   1   |||||*|*||||||||||||* targets:2833   AACGAGGACAUAUAUUUAAGC   2853 Target Full Sequence	3.0	PREDICTED: Zea mays ABC transporter G family member 11 (LOC103632890), transcript variant X1, mRNA	NA	coding protein	psRNATarget