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BaseInfo

ncRNA ID	novel_zma_miR1016
Species	Zea mays
Class	miRNA
Genome position	Chr4:16086014-16086106 [+]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	70 - CAUAUAGAUUGAGGGGGAUUGAGG - 93
Stem-loop(if miRNA)	--         -      C         -             UG      UCAAUCCCC UUAAUC AUAUGGAUU GGGUAGAACCGAA  GAUU   ||||||||| |||||| ||||||||| |||||||||||||  |||G   AGUUAGGGG AGUUAG UAUACCUAA CCCAUCUUGGCUU  UUGG GG         G      A         U             GU
Stem-loop sequence	UCAAUCCCCUUAAUCCAUAUGGAUUGGGUAGAACCGAAUGGAUUGGGUUUGUUCGGUUCUACCCUAAUCCAUAUAGAUUGAGGGGGAUUGAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241947.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   ||||||||||||||||||*||||| targets:78   CCUCAAUCCCCCUCAAUCCAUAUG   101 Target Full Sequence	1.5	Sequence 7942 from Patent EP2985353	NA	coding protein	psRNATarget
HI409817.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   ||||||||||||||||||*||||| targets:78   CCUCAAUCCCCCUCAAUCCAUAUG   101 Target Full Sequence	1.5	Sequence 7942 from Patent EP2074227	NA	coding protein	psRNATarget
JB170278.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   ||||||||||||||||||*||||| targets:78   CCUCAAUCCCCCUCAAUCCAUAUG   101 Target Full Sequence	1.5	Sequence 7942 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008680349.2	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   ||||||||||||||||||*||||| targets:1967   CCUCAAUCCCCCUCAAUCCAUAUG   1990 Target Full Sequence	1.5	PREDICTED: Zea mays peptidase/ serine-type peptidase (LOC100284377), transcript variant X1, mRNA	NA	coding protein	psRNATarget
HI408824.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   |||||||||=||||||||*||||| targets:79   CCUCAAUCCUCCUCAAUCCAUAUG   102 Target Full Sequence	2.5	Sequence 6949 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240954.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   |||||||||=||||||||*||||| targets:79   CCUCAAUCCUCCUCAAUCCAUAUG   102 Target Full Sequence	2.5	Sequence 6949 from Patent EP2985353	NA	coding protein	psRNATarget
JB169285.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   |||||||||=||||||||*||||| targets:79   CCUCAAUCCUCCUCAAUCCAUAUG   102 Target Full Sequence	2.5	Sequence 6949 from Patent EP2559767	NA	coding protein	psRNATarget
EU972313.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   ||||=|||||||||||||*||||| targets:28   CCUCGAUCCCCCUCAAUCCAUAUG   51 Target Full Sequence	1.5	Zea mays clone 379548 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT061531.2	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   |=||||||||||||||||*||||| targets:847   CUUCAAUCCCCCUCAAUCCAUAUG   870 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0155L17 mRNA, complete cds	NA	coding protein	psRNATarget
EU962730.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   ||||||||||=|||||||*||||| targets:1071   CCUCAAUCCCUCUCAAUCCAUAUG   1094 Target Full Sequence	2.5	Zea mays clone 245054 mRNA sequence	NA	coding protein	psRNATarget
EU955707.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   *|||||||||||||||||*||||| targets:604   ACUCAAUCCCCCUCAAUCCAUAUG   627 Target Full Sequence	1.5	Zea mays clone 1543022 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT035012.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   ||||||||*|||||||||*||||| targets:1606   CCUCAAUCACCCUCAAUCCAUAUG   1629 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0031M23 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138093.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   ||||||||*|||||||||*||||| targets:1606   CCUCAAUCACCCUCAAUCCAUAUG   1629 Target Full Sequence	2.5	Zea mays uncharacterized LOC100192906 (LOC100192906), mRNA	NA	coding protein	psRNATarget
EU951312.1	ncRNA:24   GGAG-UUAGGGGGAGUUAGAUAUAC   1   |=|=-||||||||||||||*||||| targets:367   CUUUGAAUCCCCCUCAAUCCAUAUG   391 Target Full Sequence	1.5	Zea mays clone 695515 mRNA sequence	NA	coding protein	psRNATarget
AY104043.1	ncRNA:24   GGAG-UUAGGGGGAGUUAGAUAUAC   1   |=|=-||||||||||||||*||||| targets:907   CUUUGAAUCCCCCUCAAUCCAUAUG   931 Target Full Sequence	1.5	Zea mays PCO145885 mRNA sequence	NA	coding protein	psRNATarget
BT068594.1	ncRNA:24   GGAG-UUAGGGGGAGUUAGAUAUAC   1   |=|=-||||||||||||||*||||| targets:904   CUUUGAAUCCCCCUCAAUCCAUAUG   928 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0348O14 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001151506.1	ncRNA:24   GGAG-UUAGGGGGAGUUAGAUAUAC   1   |=|=-||||||||||||||*||||| targets:934   CUUUGAAUCCCCCUCAAUCCAUAUG   958 Target Full Sequence	1.5	Zea mays ER membrane protein complex subunit 7-like protein (pco145885(696)), mRNA	NA	coding protein	psRNATarget
EU972032.1	ncRNA:24   GGAG-UUAGGGGGAGUUAGAUAUAC   1   |=|=-||||||||||||||*||||| targets:934   CUUUGAAUCCCCCUCAAUCCAUAUG   958 Target Full Sequence	1.5	Zea mays clone 373636 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT068463.1	ncRNA:24   GGAG-UUAGGGGGAGUUAGAUAUAC   1   |=|=-||||||||||||||*||||| targets:1206   CUUUGAAUCCCCCUCAAUCCAUAUG   1230 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0213N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT018999.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   |||-||||||=|||||||*||||| targets:463   CCU-AAUCCCUCUCAAUCCAUAUG   485 Target Full Sequence	2.5	Zea mays clone Contig487.F mRNA sequence	NA	coding protein	psRNATarget
XM_020537806.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   ||*=|||||*|||||||*|||||| targets:5357   CCAUAAUCCACCUCAAUAUAUAUG   5380 Target Full Sequence	2.5	PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020537807.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   ||*=|||||*|||||||*|||||| targets:5015   CCAUAAUCCACCUCAAUAUAUAUG   5038 Target Full Sequence	2.5	PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020537805.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   ||*=|||||*|||||||*|||||| targets:4991   CCAUAAUCCACCUCAAUAUAUAUG   5014 Target Full Sequence	2.5	PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020537809.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   ||*=|||||*|||||||*|||||| targets:4991   CCAUAAUCCACCUCAAUAUAUAUG   5014 Target Full Sequence	2.5	PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020537808.1	ncRNA:24   GGAGUUAGGGGGAGUUAGAUAUAC   1   ||*=|||||*|||||||*|||||| targets:2480   CCAUAAUCCACCUCAAUAUAUAUG   2503 Target Full Sequence	2.5	PREDICTED: Zea mays putative ubiquitin-like-specific protease 1B (LOC103625696), transcript variant X4, mRNA	NA	coding protein	psRNATarget