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BaseInfo

ncRNA ID	novel_zma_miR1015
Species	Zea mays
Class	miRNA
Genome position	Chr4:179677217-179677346 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2287160;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - AGGUCUUGUUCGUUUCCGUCGGAU - 24
Stem-loop(if miRNA)	--                C         --CACC     UA    CAAUUAAUCAAA    --A  U   AGGUCUUGUUCGUUUC GUCGGAUUG      CGGAA  GUUC            GUUU   UA A   |||||||||||||||| |||||||||      |||||  ||||            ||||   || A   UCCGGAACAAGCAAAG CAGCCUAAC      GCCUU  UAAG            CGAA   AU A AU                A         CACCCA     GC    -AACUGGCCUAA    GAG  U
Stem-loop sequence	AGGUCUUGUUCGUUUCCGUCGGAUUGCACCCGGAAUAGUUCCAAUUAAUCAAAGUUUAUAUAAAUUAGAGAAGCAAUCCGGUCAAGAAUCGUUCCGACCCACCAAUCCGACAGAAACGAACAAGGCCUUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB169205.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:114   AUCCGACGGAAACGAACAAGGCCU   137 Target Full Sequence	1.5	Sequence 6869 from Patent EP2559767	NA	coding protein	psRNATarget
HI408744.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:114   AUCCGACGGAAACGAACAAGGCCU   137 Target Full Sequence	1.5	Sequence 6869 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240874.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:114   AUCCGACGGAAACGAACAAGGCCU   137 Target Full Sequence	1.5	Sequence 6869 from Patent EP2985353	NA	coding protein	psRNATarget
JB166550.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:115   AUCCGACGGAAACGAACAAGGCCU   138 Target Full Sequence	1.5	Sequence 4214 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238219.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:115   AUCCGACGGAAACGAACAAGGCCU   138 Target Full Sequence	1.5	Sequence 4214 from Patent EP2985353	NA	coding protein	psRNATarget
HI406089.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:115   AUCCGACGGAAACGAACAAGGCCU   138 Target Full Sequence	1.5	Sequence 4214 from Patent EP2074227	NA	coding protein	psRNATarget
EU949492.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:349   AUCCGACGGAAACGAACAAGGCCU   372 Target Full Sequence	1.5	Zea mays clone 420421 mRNA sequence	NA	coding protein	psRNATarget
EU948349.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:587   AUCCGACGGAAACGAACAAGGCCU   610 Target Full Sequence	1.5	Zea mays clone 373385 mRNA sequence	NA	coding protein	psRNATarget
BT017859.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:1037   AUCCGACGGAAACGAACAAGGCCU   1060 Target Full Sequence	1.5	Zea mays clone EL01N0511E01.c mRNA sequence	NA	coding protein	psRNATarget
NM_001155337.2	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:1419   AUCCGACGGAAACGAACAAGGCCU   1442 Target Full Sequence	1.5	Zea mays protein recA (LOC100282426), mRNA	NA	coding protein	psRNATarget
EU960853.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:1420   AUCCGACGGAAACGAACAAGGCCU   1443 Target Full Sequence	1.5	Zea mays clone 229066 protein recA mRNA, complete cds	NA	coding protein	psRNATarget
XM_020538339.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:470   AUCCGACGGAAACGAACAAGGCCU   493 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized vacuolar membrane protein YML018C-like (LOC109939916), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001175825.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:1697   AUCCGACGGAAACGAACAAGGCCU   1720 Target Full Sequence	1.5	Zea mays putative DEAD-box ATP-dependent RNA helicase family protein (LOC100383160), mRNA	NA	coding protein	psRNATarget
BT066418.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:1697   AUCCGACGGAAACGAACAAGGCCU   1720 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0124A04 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153653.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:2614   AUCCGACGGAAACGAACAAGGCCU   2637 Target Full Sequence	1.5	Zea mays ATP-binding cassette sub-family G member 2 (LOC100280733), mRNA	NA	coding protein	psRNATarget
EU953449.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||||||||||||||=||| targets:2614   AUCCGACGGAAACGAACAAGGCCU   2637 Target Full Sequence	1.5	Zea mays clone 1412735 ATP-binding cassette sub-family G member 2 mRNA, complete cds	NA	coding protein	psRNATarget
HI405804.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||=|||||||||||||=||| targets:115   AUCCGAUGGAAACGAACAAGGCCU   138 Target Full Sequence	2.5	Sequence 3929 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237934.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||=|||||||||||||=||| targets:115   AUCCGAUGGAAACGAACAAGGCCU   138 Target Full Sequence	2.5	Sequence 3929 from Patent EP2985353	NA	coding protein	psRNATarget
JB166265.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||=|||||||||||||=||| targets:115   AUCCGAUGGAAACGAACAAGGCCU   138 Target Full Sequence	2.5	Sequence 3929 from Patent EP2559767	NA	coding protein	psRNATarget
EU953779.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||=|||||||||||||=||| targets:724   AUCCGAUGGAAACGAACAAGGCCU   747 Target Full Sequence	2.5	Zea mays clone 1445891 mRNA sequence	NA	coding protein	psRNATarget
BT066464.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||==||||||||||||||||| targets:1270   AUCCGGUGGAAACGAACAAGACCU   1293 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0001K21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008666870.2	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||==||||||||||||||||| targets:1697   AUCCGGUGGAAACGAACAAGACCU   1720 Target Full Sequence	2.0	PREDICTED: Zea mays translation initiation factor eIF-2B subunit delta (LOC100217034), mRNA	NA	coding protein	psRNATarget
BT068430.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||||*|||||||||||||||| targets:557   AUCCGACAGAAACGAACAAGACCU   580 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0175H08 mRNA, complete cds	NA	coding protein	psRNATarget
LQ238081.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||=||| targets:111   AUCCGACGUAAACGAACAAGGCCU   134 Target Full Sequence	2.5	Sequence 4076 from Patent EP2985353	NA	coding protein	psRNATarget
JB166412.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||=||| targets:111   AUCCGACGUAAACGAACAAGGCCU   134 Target Full Sequence	2.5	Sequence 4076 from Patent EP2559767	NA	coding protein	psRNATarget
HI405951.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||=||| targets:111   AUCCGACGUAAACGAACAAGGCCU   134 Target Full Sequence	2.5	Sequence 4076 from Patent EP2074227	NA	coding protein	psRNATarget
JB166406.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||=*|||||||||||||||| targets:111   AUCCGAUAGAAACGAACAAGACCU   134 Target Full Sequence	2.0	Sequence 4070 from Patent EP2559767	NA	coding protein	psRNATarget
HI405945.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||=*|||||||||||||||| targets:111   AUCCGAUAGAAACGAACAAGACCU   134 Target Full Sequence	2.0	Sequence 4070 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238075.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||=*|||||||||||||||| targets:111   AUCCGAUAGAAACGAACAAGACCU   134 Target Full Sequence	2.0	Sequence 4070 from Patent EP2985353	NA	coding protein	psRNATarget
JB166358.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||=||| targets:116   AUCCGACGUAAACGAACAAGGCCU   139 Target Full Sequence	2.5	Sequence 4022 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238027.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||=||| targets:116   AUCCGACGUAAACGAACAAGGCCU   139 Target Full Sequence	2.5	Sequence 4022 from Patent EP2985353	NA	coding protein	psRNATarget
HI405897.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||=||| targets:116   AUCCGACGUAAACGAACAAGGCCU   139 Target Full Sequence	2.5	Sequence 4022 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008653755.2	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||=||| targets:433   AUCCGACGUAAACGAACAAGGCCU   456 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020541330.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||=||| targets:515   AUCCGACGUAAACGAACAAGGCCU   538 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008676360.2	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||||*||||||||||||=||| targets:1925   AUCCGACAGAAACGAACAAGGCCU   1948 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676377.2	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||||*||||||||||||=||| targets:1999   AUCCGACAGAAACGAACAAGGCCU   2022 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676366.2	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||||*||||||||||||=||| targets:2017   AUCCGACAGAAACGAACAAGGCCU   2040 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008653754.2	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||=||| targets:697   AUCCGACGUAAACGAACAAGGCCU   720 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008676374.2	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||||*||||||||||||=||| targets:2093   AUCCGACAGAAACGAACAAGGCCU   2116 Target Full Sequence	2.5	PREDICTED: Zea mays protein-O-fucosyltransferase 1 (LOC100281382), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008653753.2	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||=||| targets:899   AUCCGACGUAAACGAACAAGGCCU   922 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103631908 (LOC103631908), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166368.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||*||| targets:115   AUCCGACGCAAACGAACAAGCCCU   138 Target Full Sequence	2.5	Sequence 4032 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238037.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||*||| targets:115   AUCCGACGCAAACGAACAAGCCCU   138 Target Full Sequence	2.5	Sequence 4032 from Patent EP2985353	NA	coding protein	psRNATarget
HI405907.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||*||| targets:115   AUCCGACGCAAACGAACAAGCCCU   138 Target Full Sequence	2.5	Sequence 4032 from Patent EP2074227	NA	coding protein	psRNATarget
EZ056395.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||*||| targets:138   AUCCGACGUAAACGAACAAGCCCU   161 Target Full Sequence	2.5	TSA: Zea mays contig57517, mRNA sequence	NA	coding protein	psRNATarget
BT019200.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||*||| targets:1045   AUCCGACGCAAACGAACAAGCCCU   1068 Target Full Sequence	2.5	Zea mays clone Contig873.F mRNA sequence	NA	coding protein	psRNATarget
XM_008647453.2	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||*||| targets:3374   AUCCGACGCAAACGAACAAGCCCU   3397 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103627145 (LOC103627145), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008647452.2	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||||||||*|||||||||||*||| targets:3362   AUCCGACGCAAACGAACAAGCCCU   3385 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC103627145 (LOC103627145), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB166401.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||=||||**||||||||||||||| targets:111   AUUCGACACAAACGAACAAGACCU   134 Target Full Sequence	2.0	Sequence 4065 from Patent EP2559767	NA	coding protein	psRNATarget
HI405940.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||=||||**||||||||||||||| targets:111   AUUCGACACAAACGAACAAGACCU   134 Target Full Sequence	2.0	Sequence 4065 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238070.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   ||=||||**||||||||||||||| targets:111   AUUCGACACAAACGAACAAGACCU   134 Target Full Sequence	2.0	Sequence 4065 from Patent EP2985353	NA	coding protein	psRNATarget
LQ238065.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||=|**||||||||||||||| targets:109   AUCCGGCACAAACGAACAAGACCU   132 Target Full Sequence	3.0	Sequence 4060 from Patent EP2985353	NA	coding protein	psRNATarget
JB166396.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||=|**||||||||||||||| targets:109   AUCCGGCACAAACGAACAAGACCU   132 Target Full Sequence	3.0	Sequence 4060 from Patent EP2559767	NA	coding protein	psRNATarget
HI405935.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||=|**||||||||||||||| targets:109   AUCCGGCACAAACGAACAAGACCU   132 Target Full Sequence	3.0	Sequence 4060 from Patent EP2074227	NA	coding protein	psRNATarget
EZ073175.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |*|||||*||||||||||||=||| targets:63   AACCGACAGAAACGAACAAGGCCU   86 Target Full Sequence	2.5	TSA: Zea mays contig08812, mRNA sequence	NA	coding protein	psRNATarget
EU974791.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||=|**||||||||||||||| targets:574   AUCCGGCACAAACGAACAAGACCU   597 Target Full Sequence	3.0	Zea mays clone 458239 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU975407.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||=|**||||||||||||||| targets:573   AUCCGGCACAAACGAACAAGACCU   596 Target Full Sequence	3.0	Zea mays clone 489701 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
BT035367.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||=|**||||||||||||||| targets:1319   AUCCGGCACAAACGAACAAGACCU   1342 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0057L05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001138328.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||=|**||||||||||||||| targets:1319   AUCCGGCACAAACGAACAAGACCU   1342 Target Full Sequence	3.0	Zea mays uncharacterized LOC100193173 (LOC100193173), mRNA	NA	coding protein	psRNATarget
EU972216.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||=|**||||||||||||||| targets:1337   AUCCGGCACAAACGAACAAGACCU   1360 Target Full Sequence	3.0	Zea mays clone 377576 mRNA sequence	NA	coding protein	psRNATarget
BT066445.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||=|**||||||||||||||| targets:956   AUCCGGCACAAACGAACAAGACCU   979 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0173D16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175834.1	ncRNA:24   UAGGCUGCCUUUGCUUGUUCUGGA   1   |||||=|**||||||||||||||| targets:956   AUCCGGCACAAACGAACAAGACCU   979 Target Full Sequence	3.0	Zea mays 14-dihydroxy-2-naphthoyl-CoA thioesterase 1 (LOC100383169), mRNA	NA	coding protein	psRNATarget