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BaseInfo

ncRNA ID	novel_zma_miR1011
Species	Zea mays
Class	miRNA
Genome position	Chr4:149417079-149417195 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2287031
Length	24
Mature sequence(if miRNA)	94 - AAGGGGAUCUCGGGAGGAUUGGAG - 117
Stem-loop(if miRNA)	--   AC        --UC  UU    GC    UU  U   A     AUAAACA    AGUA   CCA  GUCUUUCU    UU  CUUG  ACUA  UC AGC CUUAG       UGUU    U   |||  ||||||||    ||  ||||  ||||  || ||| |||||       ||||   GGU  UAGGAGGG    AG  GAAC  UGGU  AG UUG GAAUC       ACAA    U GA   --        CUCU  GG    AC    UU  -   G     --ACUUA    AAAC
Stem-loop sequence	CCAACGUCUUUCUUCUUUUCUUGGCACUAUUUCUAGCACUUAGAUAAACAUGUUAGUAUUCAAAAACAAUUCACUAAGGGUUGAUUUGGUCACAAGGGGAUCUCGGGAGGAUUGGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170124.1	ncRNA:24   GAGGUUAGGAGGGCUCUAGGGGAA   1   ||=|||||||||||=||||||||| targets:81   CUUCAAUCCUCCCGGGAUCCCCUU   104 Target Full Sequence	1.5	Sequence 7788 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241793.1	ncRNA:24   GAGGUUAGGAGGGCUCUAGGGGAA   1   ||=|||||||||||=||||||||| targets:81   CUUCAAUCCUCCCGGGAUCCCCUU   104 Target Full Sequence	1.5	Sequence 7788 from Patent EP2985353	NA	coding protein	psRNATarget
HI409663.1	ncRNA:24   GAGGUUAGGAGGGCUCUAGGGGAA   1   ||=|||||||||||=||||||||| targets:81   CUUCAAUCCUCCCGGGAUCCCCUU   104 Target Full Sequence	1.5	Sequence 7788 from Patent EP2074227	NA	coding protein	psRNATarget
EU961132.1	ncRNA:24   GAGGUUAGGAGGGCUCUAGGGGAA   1   ||=|||||||||||=||||||||| targets:835   CUUCAAUCCUCCCGGGAUCCCCUU   858 Target Full Sequence	1.5	Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds	NA	coding protein	psRNATarget
BT040716.2	ncRNA:24   GAGGUUAGGAGGGCUCUAGGGGAA   1   ||=|||||||||||=||||||||| targets:874   CUUCAAUCCUCCCGGGAUCCCCUU   897 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds	NA	coding protein	psRNATarget
BT066291.1	ncRNA:24   GAGGUUAGGAGGGCUCUAGGGGAA   1   ||=|||||||||||=||||||||| targets:879   CUUCAAUCCUCCCGGGAUCCCCUU   902 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001147738.1	ncRNA:24   GAGGUUAGGAGGGCUCUAGGGGAA   1   ||=|||||||||||=||||||||| targets:879   CUUCAAUCCUCCCGGGAUCCCCUU   902 Target Full Sequence	1.5	Zea mays putative glutathione peroxidase (LOC100273297), mRNA	NA	coding protein	psRNATarget
EU953234.1	ncRNA:24   GAGGUUAGGAGGGCUCUAGGGGAA   1   |*||||||||||||=||||||||| targets:1484   CCCCAAUCCUCCCGGGAUCCCCUU   1507 Target Full Sequence	1.5	Zea mays clone 1392496 mRNA sequence	NA	coding protein	psRNATarget
EZ106816.1	ncRNA:24   GAGGUUAGGAGGGCUCUAGGGGAA   1   **=|||||||||||*||||||||| targets:285   AAUCAAUCCUCCCGUGAUCCCCUU   308 Target Full Sequence	1.5	TSA: Zea mays contig42474, mRNA sequence	NA	coding protein	psRNATarget