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BaseInfo

ncRNA ID osa-miR2118l
Species Oryza sativa
Class miRNA
Genome position Chr4:21656708-21656884 [-]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 36 - UUCCUAAUGCUUCCCAUUCCUA - 57
Stem-loop(if miRNA)    G  UU            AAAUU          G              -  A     A       CU    UAUUUUCU        AGA
AGC AG  AGGAAGAGGAAG     GAGUGUCUAA AACAGUGGGAAUGG AA CAUUA GGAAAGC  ACAG        UCUCCACU   A
||| ||  ||||||||||||     |||||||||| |||||||||||||| || ||||| |||||||  ||||        ||||||||   U
UCG UU  UCCUUCUCCUUC     CUCAUAGAUU UUGUUAUCCUUACC UU GUAAU CCUUUUG  UGUU        AGAGGUGG   U
   G  -U            -----          G              C  C     -       --    UUCUUAAU        GGA
Stem-loop sequence AGCGAGUUAGGAAGAGGAAGAAAUUGAGUGUCUAAGAACAGUGGGAAUGGAAACAUUAAGGAAAGCCUACAGUAUUUUCUUCUCCACUAGAAUUAGGGGUGGAGAUAAUUCUUUUGUGUUUUCCUAAUGCUUCCCAUUCCUAUUGUUGUUAGAUACUCCUUCCUCUUCCUUUUGGCU

Reference

1 PMID:19584097
"Clusters and superclusters of phased small RNAs in the developing inflorescence of rice";
Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH;
Genome Res. 19:1429-1440(2009).