ncRNA ID | osa-miR2118l |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr4:21656708-21656884 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 36 - UUCCUAAUGCUUCCCAUUCCUA - 57 |
Stem-loop(if miRNA) |
   G  UU            AAAUU          G              -  A     A       CU    UAUUUUCU        AGA AGC AG  AGGAAGAGGAAG     GAGUGUCUAA AACAGUGGGAAUGG AA CAUUA GGAAAGC  ACAG        UCUCCACU   A ||| ||  ||||||||||||     |||||||||| |||||||||||||| || ||||| |||||||  ||||        ||||||||   U UCG UU  UCCUUCUCCUUC     CUCAUAGAUU UUGUUAUCCUUACC UU GUAAU CCUUUUG  UGUU        AGAGGUGG   U    G  -U            -----          G              C  C     -       --    UUCUUAAU        GGA |
Stem-loop sequence | AGCGAGUUAGGAAGAGGAAGAAAUUGAGUGUCUAAGAACAGUGGGAAUGGAAACAUUAAGGAAAGCCUACAGUAUUUUCUUCUCCACUAGAAUUAGGGGUGGAGAUAAUUCUUUUGUGUUUUCCUAAUGCUUCCCAUUCCUAUUGUUGUUAGAUACUCCUUCCUCUUCCUUUUGGCU |
1 | PMID:19584097
"Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"; Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH; Genome Res. 19:1429-1440(2009). |