Search result

BaseInfo

ncRNA ID	novel_zma_miR1009
Species	Zea mays
Class	miRNA
Genome position	Chr10:37099244-37099311 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089711;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR5451004;SRR5451005;SRR1997866;SRR2089701;SRR2089708
Length	22
Mature sequence(if miRNA)	47 - UGCUCAUGCUCCAUCGUCGGUC - 68
Stem-loop(if miRNA)	---U   ---        AUC  CGGUCGCUGCAGA     GCU   CAUGCUCC   GU             A     |||   ||||||||   ||             A     UGA   GUAUGAGG   GC             C GGAC   ACC        -CA  CGAUGCAAUCAGC
Stem-loop sequence	UGCUCAUGCUCCAUCGUCGGUCGCUGCAGAAACCGACUAACGUAGCCGACGGAGUAUGCCAAGUCAGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020538917.1	ncRNA:22   CUGGCUGCUACCUCGUACUCGU   1   *||||||||||||||||||||| targets:88   AACCGACGAUGGAGCAUGAGCA   109 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100280126 (LOC100280126), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538918.1	ncRNA:22   CUGGCUGCUACCUCGUACUCGU   1   *||||||||||||||||||||| targets:3232   AACCGACGAUGGAGCAUGAGCA   3253 Target Full Sequence	0.0	PREDICTED: Zea mays uncharacterized LOC100280126 (LOC100280126), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020549270.1	ncRNA:22   CUGGCUGCUACCUCGUACUCGU   1   *=|||*||||||||||*||||| targets:215   CGCCGUCGAUGGAGCACGAGCA   236 Target Full Sequence	2.5	PREDICTED: Zea mays ethylene-responsive transcription factor ERF034 (LOC103648466), partial mRNA	NA	coding protein	psRNATarget