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BaseInfo

ncRNA ID novel_zma_miR1007
Species Zea mays
Class miRNA
Genome position Chr4:136949232-136949295 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR2089708
Length 24
Mature sequence(if miRNA) 1 - GAGGAUUGGAGGGGAUUGAGGGGA - 24
Stem-loop(if miRNA) --                       A    AA
  GAGGAUUGGAGGGGAUUGAGGGG AAAU  A
  ||||||||||||||||||||||| ||||
  CUCCUAACCUCCCCUAACUCCCC UUUA  C
CC                       C    AU
Stem-loop sequence GAGGAUUGGAGGGGAUUGAGGGGAAAAUAAACUAAUUUCCCCCUCAAUCCCCUCCAAUCCUCCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI403493.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *|||||||||||||||||||||||
targets:33   CCCCCUCAAUCCCCUCCAAUCCUC   56

0.0 Sequence 1618 from Patent EP2074227 NA coding protein psRNATarget
LQ235623.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *|||||||||||||||||||||||
targets:33   CCCCCUCAAUCCCCUCCAAUCCUC   56

0.0 Sequence 1618 from Patent EP2985353 NA coding protein psRNATarget
JB163954.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *|||||||||||||||||||||||
targets:33   CCCCCUCAAUCCCCUCCAAUCCUC   56

0.0 Sequence 1618 from Patent EP2559767 NA coding protein psRNATarget
LQ235485.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  ||=||||||||||||||||||||=
targets:31   UCUCCUCAAUCCCCUCCAAUCCUU   54

1.0 Sequence 1480 from Patent EP2985353 NA coding protein psRNATarget
HI403355.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  ||=||||||||||||||||||||=
targets:31   UCUCCUCAAUCCCCUCCAAUCCUU   54

1.0 Sequence 1480 from Patent EP2074227 NA coding protein psRNATarget
JB163816.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  ||=||||||||||||||||||||=
targets:31   UCUCCUCAAUCCCCUCCAAUCCUU   54

1.0 Sequence 1480 from Patent EP2559767 NA coding protein psRNATarget
EZ098881.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  |=||||=|||||||||||||||||
targets:78   UUCCCUUAAUCCCCUCCAAUCCUC   101

1.0 TSA: Zea mays contig34536, mRNA sequence NA coding protein psRNATarget
EZ055746.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  ||*|||||||||||||||||||||
targets:76   UCACCUCAAUCCCCUCCAAUCCUC   99

0.0 TSA: Zea mays contig56868, mRNA sequence NA coding protein psRNATarget
XM_020551688.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *||||||||||||||||=||||||
targets:2151   CCCCCUCAAUCCCCUCCGAUCCUC   2174

1.5 PREDICTED: Zea mays hypothetical protein (LOC100383632), transcript variant X1, mRNA NA coding protein psRNATarget
AY110351.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  ||*|||||||||||||||||||||
targets:42   UCACCUCAAUCCCCUCCAAUCCUC   65

0.0 Zea mays CL33021_1 mRNA sequence NA coding protein psRNATarget
LQ241793.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *|||||=||||||||=||||||||
targets:68   CCCCCUUAAUCCCCUUCAAUCCUC   91

2.5 Sequence 7788 from Patent EP2985353 NA coding protein psRNATarget
HI409663.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *|||||=||||||||=||||||||
targets:68   CCCCCUUAAUCCCCUUCAAUCCUC   91

2.5 Sequence 7788 from Patent EP2074227 NA coding protein psRNATarget
JB170124.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *|||||=||||||||=||||||||
targets:68   CCCCCUUAAUCCCCUUCAAUCCUC   91

2.5 Sequence 7788 from Patent EP2559767 NA coding protein psRNATarget
BT088155.1
ncRNA:24   AGGG-GAGUUAGGGGAGGUUAGGAG   1
  ||=|-||||||||||||||||||||
targets:1463   UCUCUCUCAAUCCCCUCCAAUCCUC   1487

0.0 Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds NA coding protein psRNATarget
EU961132.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *|||||=||||||||=||||||||
targets:822   CCCCCUUAAUCCCCUUCAAUCCUC   845

2.5 Zea mays clone 232865 phospholipid hydroperoxide glutathione peroxidase mRNA, complete cds NA coding protein psRNATarget
BT040716.2
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *|||||=||||||||=||||||||
targets:861   CCCCCUUAAUCCCCUUCAAUCCUC   884

2.5 Zea mays full-length cDNA clone ZM_BFc0120F10 mRNA, complete cds NA coding protein psRNATarget
NM_001147738.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *|||||=||||||||=||||||||
targets:866   CCCCCUUAAUCCCCUUCAAUCCUC   889

2.5 Zea mays putative glutathione peroxidase (LOC100273297), mRNA NA coding protein psRNATarget
BT066291.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *|||||=||||||||=||||||||
targets:866   CCCCCUUAAUCCCCUUCAAUCCUC   889

2.5 Zea mays full-length cDNA clone ZM_BFc0176M03 mRNA, complete cds NA coding protein psRNATarget
LQ235148.1
ncRNA:24   AGGG-GAGUUAGGGGAGGUUAGGAG   1
  |||=-|||||||||||||=||||||
targets:54   UCCUUCUCAAUCCCCUCCGAUCCUC   78

1.5 Sequence 1143 from Patent EP2985353 NA coding protein psRNATarget
JB163479.1
ncRNA:24   AGGG-GAGUUAGGGGAGGUUAGGAG   1
  |||=-|||||||||||||=||||||
targets:54   UCCUUCUCAAUCCCCUCCGAUCCUC   78

1.5 Sequence 1143 from Patent EP2559767 NA coding protein psRNATarget
HI403018.1
ncRNA:24   AGGG-GAGUUAGGGGAGGUUAGGAG   1
  |||=-|||||||||||||=||||||
targets:54   UCCUUCUCAAUCCCCUCCGAUCCUC   78

1.5 Sequence 1143 from Patent EP2074227 NA coding protein psRNATarget
XM_020540504.1
ncRNA:24   AGG-GGAGUUAGGGGAGGUUAGGAG   1
  |||-|||||||=||||||=||||||
targets:1847   UCCUCCUCAAUUCCCUCCGAUCCUC   1871

2.5 PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020540503.1
ncRNA:24   AGG-GGAGUUAGGGGAGGUUAGGAG   1
  |||-|||||||=||||||=||||||
targets:2285   UCCUCCUCAAUUCCCUCCGAUCCUC   2309

2.5 PREDICTED: Zea mays nucleolar RNA helicase 2 (LOC100281387), transcript variant X1, mRNA NA coding protein psRNATarget
LQ235420.1
ncRNA:24   AGGG-GAGUUAGGGGAGGUUAGGAG   1
  ||=|-||||||||||||||||||*|
targets:70   UCUCACUCAAUCCCCUCCAAUCCCC   94

1.5 Sequence 1415 from Patent EP2985353 NA coding protein psRNATarget
JB163751.1
ncRNA:24   AGGG-GAGUUAGGGGAGGUUAGGAG   1
  ||=|-||||||||||||||||||*|
targets:70   UCUCACUCAAUCCCCUCCAAUCCCC   94

1.5 Sequence 1415 from Patent EP2559767 NA coding protein psRNATarget
HI403290.1
ncRNA:24   AGGG-GAGUUAGGGGAGGUUAGGAG   1
  ||=|-||||||||||||||||||*|
targets:70   UCUCACUCAAUCCCCUCCAAUCCCC   94

1.5 Sequence 1415 from Patent EP2074227 NA coding protein psRNATarget
XM_008654495.2
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  **|==|||||||||||||||*|||
targets:1328   CACUUUCAAUCCCCUCCAAUACUC   1351

1.5 PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA NA coding protein psRNATarget
XM_008666284.2
ncRNA:24   AGG-GGAGUUAGGGGAGGUUAGGAG   1
  |||-|=||||||||*|||||||||*
targets:3281   UCCACUUCAAUCCCAUCCAAUCCUA   3305

2.5 PREDICTED: Zea mays protein indeterminate-domain 16 (LOC103643131), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008666283.2
ncRNA:24   AGG-GGAGUUAGGGGAGGUUAGGAG   1
  |||-|=||||||||*|||||||||*
targets:3364   UCCACUUCAAUCCCAUCCAAUCCUA   3388

2.5 PREDICTED: Zea mays protein indeterminate-domain 16 (LOC103643131), transcript variant X1, mRNA NA coding protein psRNATarget
HI403300.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *****||||||||=||||||||||
targets:32   GAGGAUCAAUCCCUUCCAAUCCUC   55

1.5 Sequence 1425 from Patent EP2074227 NA coding protein psRNATarget
JB163888.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *****||||||||=||||||||||
targets:32   GAGGAUCAAUCCCUUCCAAUCCUC   55

1.5 Sequence 1552 from Patent EP2559767 NA coding protein psRNATarget
LQ235557.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *****||||||||=||||||||||
targets:32   GAGGAUCAAUCCCUUCCAAUCCUC   55

1.5 Sequence 1552 from Patent EP2985353 NA coding protein psRNATarget
HI403427.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *****||||||||=||||||||||
targets:32   GAGGAUCAAUCCCUUCCAAUCCUC   55

1.5 Sequence 1552 from Patent EP2074227 NA coding protein psRNATarget
JB163761.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *****||||||||=||||||||||
targets:32   GAGGAUCAAUCCCUUCCAAUCCUC   55

1.5 Sequence 1425 from Patent EP2559767 NA coding protein psRNATarget
LQ235430.1
ncRNA:24   AGGGGAGUUAGGGGAGGUUAGGAG   1
  *****||||||||=||||||||||
targets:32   GAGGAUCAAUCCCUUCCAAUCCUC   55

1.5 Sequence 1425 from Patent EP2985353 NA coding protein psRNATarget
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