Search result

BaseInfo

ncRNA ID	novel_zma_miR1005
Species	Zea mays
Class	miRNA
Genome position	Chr3:114388225-114388304 [+]
Reference genome	RefGen_v4
Source	SRR2089710
Length	21
Mature sequence(if miRNA)	1 - GAGGGGAUCCAUGGGGGAGUA - 21
Stem-loop(if miRNA)	--               G   U         G       A   GAGGGGAUCCAUGGG GAG AAUUCCCUU CUAUUCA U   ||||||||||||||| ||| ||||||||| |||||||   UUCCCCUAGGUACCC CUC UUAGGGGAA GAUAAGU U UG               A   C         A       U
Stem-loop sequence	GAGGGGAUCCAUGGGGGAGUAAUUCCCUUGCUAUUCAAUUUUGAAUAGAAAGGGGAUUCCUCACCCAUGGAUCCCCUUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB163458.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   ||||||||||||||||||||| targets:86   UACUCCCCCAUGGAUCCCCUC   106 Target Full Sequence	0.0	Sequence 1122 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235127.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   ||||||||||||||||||||| targets:86   UACUCCCCCAUGGAUCCCCUC   106 Target Full Sequence	0.0	Sequence 1122 from Patent EP2985353	NA	coding protein	psRNATarget
HI402997.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   ||||||||||||||||||||| targets:86   UACUCCCCCAUGGAUCCCCUC   106 Target Full Sequence	0.0	Sequence 1122 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008649119.2	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*||||||||||||||||||= targets:11   UCCUCCCCCAUGGAUCCCCUU   31 Target Full Sequence	1.0	PREDICTED: Zea mays PHD transcription factor (PHD35), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EZ063036.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*|||=|||||||||=||||| targets:247   UCCUCUCCCAUGGAUUCCCUC   267 Target Full Sequence	2.5	TSA: Zea mays contig64158, mRNA sequence	NA	coding protein	psRNATarget
XM_020545246.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*||||||||||||||||||* targets:128   UCCUCCCCCAUGGAUCCCCUA   148 Target Full Sequence	1.0	PREDICTED: Zea mays methyl binding domain113 (cl26423_1), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008681394.2	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*||||||||||||||||||* targets:4486   UCCUCCCCCAUGGAUCCCCUA   4506 Target Full Sequence	1.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008681392.2	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*||||||||||||||||||* targets:4660   UCCUCCCCCAUGGAUCCCCUA   4680 Target Full Sequence	1.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552825.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*||||||||||||||||||* targets:4751   UCCUCCCCCAUGGAUCCCCUA   4771 Target Full Sequence	1.0	PREDICTED: Zea mays disease resistance protein RPM1-like (LOC103654547), transcript variant X2, mRNA	NA	coding protein	psRNATarget
HI403349.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*|||||=|||*||||||||| targets:107   UUCUCCCUCAUAGAUCCCCUC   127 Target Full Sequence	2.5	Sequence 1474 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235479.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*|||||=|||*||||||||| targets:107   UUCUCCCUCAUAGAUCCCCUC   127 Target Full Sequence	2.5	Sequence 1474 from Patent EP2985353	NA	coding protein	psRNATarget
JB163810.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*|||||=|||*||||||||| targets:107   UUCUCCCUCAUAGAUCCCCUC   127 Target Full Sequence	2.5	Sequence 1474 from Patent EP2559767	NA	coding protein	psRNATarget
EU944341.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*||=|*|||||||||||||| targets:504   UUCUUCACCAUGGAUCCCCUC   524 Target Full Sequence	2.0	Zea mays clone 210925 mRNA sequence	NA	coding protein	psRNATarget
BT085264.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*||=|*|||||||||||||| targets:1639   UUCUUCACCAUGGAUCCCCUC   1659 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0348F13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645245.2	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*||=|*|||||||||||||| targets:1980   UUCUUCACCAUGGAUCCCCUC   2000 Target Full Sequence	2.0	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100279533), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT054101.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*||=|*|||||||||||||| targets:1971   UUCUUCACCAUGGAUCCCCUC   1991 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0099N22 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645247.2	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*||=|*|||||||||||||| targets:1980   UUCUUCACCAUGGAUCCCCUC   2000 Target Full Sequence	2.0	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100279533), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008645244.2	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*||=|*|||||||||||||| targets:2023   UUCUUCACCAUGGAUCCCCUC   2043 Target Full Sequence	2.0	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100279533), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008645246.2	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*||=|*|||||||||||||| targets:2023   UUCUUCACCAUGGAUCCCCUC   2043 Target Full Sequence	2.0	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100279533), transcript variant X3, mRNA	NA	coding protein	psRNATarget
BT054409.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*||=|*|||||||||||||| targets:2017   UUCUUCACCAUGGAUCCCCUC   2037 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFc0040J05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001152531.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   |*||=|*|||||||||||||| targets:2017   UUCUUCACCAUGGAUCCCCUC   2037 Target Full Sequence	2.0	Zea mays putative RING zinc finger domain superfamily protein (LOC100279533), mRNA	NA	coding protein	psRNATarget
EU946342.1	ncRNA:21   AUGAGGGGGUACCUAGGGGAG   1   **||||*|||||||||||=|| targets:88   GCCUCCGCCAUGGAUCCCUUC   108 Target Full Sequence	2.5	Zea mays clone 305005 mRNA sequence	NA	coding protein	psRNATarget