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BaseInfo

ncRNA ID	novel_zma_miR1003
Species	Zea mays
Class	miRNA
Genome position	Chr3:110463232-110463346 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089703
Length	21
Mature sequence(if miRNA)	1 - UUUGGAAGCAAGGGGAAUGAA - 21
Stem-loop(if miRNA)	--     A  C         -  A          A  C   U   -  U      U  A   UUUGG AG AAGGGGAAU GA GGGAUUGGAG GG UAA GUC CC UGCUAU CA U   ||||| || ||||||||| || |||||||||| || ||| ||| || |||||| ||   AGACU UC UUCCCCUUA CU CCCUAACCUC CC AUU UAG GG AUGAUA GU U AC     A  -         U  C          C  U   U   A  U      C  U
Stem-loop sequence	UUUGGAAGCAAGGGGAAUGAAGGGAUUGGAGAGGCUAAUGUCCCUUGCUAUUCAAUUUUGCAUAGUAUGGAGAUUUUAUCCCCUCCAAUCCCCUCUAUUCCCCUUCUAUCAGACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU945351.1	ncRNA:21   AAGUAAGGGGAACGAAGGUUU   1   |*||||=||||||||*||||| targets:432   UCCAUUUCCCUUGCUGCCAAA   452 Target Full Sequence	2.5	Zea mays clone 260481 mRNA sequence	NA	coding protein	psRNATarget
BT035317.1	ncRNA:21   AAGUAAGGGGAACGAAGGUUU   1   ||||*|=*||||||||||||| targets:645   UUCAAUUGCCUUGCUUCCAAA   665 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0054P02 mRNA, complete cds	NA	coding protein	psRNATarget
BT042276.1	ncRNA:21   AAGUAAGGGGAACGAAGGUUU   1   ||||*|=*||||||||||||| targets:655   UUCAAUUGCCUUGCUUCCAAA   675 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0187F06 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008645432.2	ncRNA:21   AAGUAAGGGGAACGAAGGUUU   1   ||||*|=*||||||||||||| targets:900   UUCAAUUGCCUUGCUUCCAAA   920 Target Full Sequence	3.0	PREDICTED: Zea mays Ubiquitin-conjugating enzyme E2 variant 1A (umc107b(croc)), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008645431.2	ncRNA:21   AAGUAAGGGGAACGAAGGUUU   1   ||||*|=*||||||||||||| targets:902   UUCAAUUGCCUUGCUUCCAAA   922 Target Full Sequence	3.0	PREDICTED: Zea mays Ubiquitin-conjugating enzyme E2 variant 1A (umc107b(croc)), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672161.2	ncRNA:21   AAGUAAGGGGAACGAAGGUUU   1   |*||||=||||||||*||||| targets:1284   UCCAUUUCCCUUGCUGCCAAA   1304 Target Full Sequence	2.5	PREDICTED: Zea mays TVP38/TMEM64 family membrane protein YtxB (LOC103647660), mRNA	NA	coding protein	psRNATarget
XM_020547641.1	ncRNA:21   AAGUAAGGGGAACGAAGGUUU   1   |*||*|||=|||||||||||| targets:3327   UCCAAUCCUCUUGCUUCCAAA   3347 Target Full Sequence	2.5	PREDICTED: Zea mays U11/U12 small nuclear ribonucleoprotein 48 kDa protein (LOC100279189), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008654031.2	ncRNA:21   AAGUAAGGGGAACGAAGGUUU   1   |*||||*|=|||||||||||| targets:1689   UCCAUUACUCUUGCUUCCAAA   1709 Target Full Sequence	2.5	PREDICTED: Zea mays peroxidase 2 (LOC103632211), transcript variant X1, mRNA	NA	coding protein	psRNATarget