Search result

BaseInfo

ncRNA ID	novel_zma_miR1001
Species	Zea mays
Class	miRNA
Genome position	Chr10:83508527-83508725 [+]
Reference genome	RefGen_v4
Source	SRR1583944
Length	22
Mature sequence(if miRNA)	1 - GAUAUCAUAUAUACAGGUUAUG - 22
Stem-loop(if miRNA)	--          A        A          U      U    G  C   GU     GA A         G   C        A     CA    A     GAUAUCAUAU UACAGGUU UGAUAAAAAA UGAGAA GUUU GA AAA  UGUGA  C CUAUGUGUA AAA CUAAGAGA CUACA  UGAA UCA   |||||||||| |||||||| |||||||||| |||||| |||| || |||  |||||  | ||||||||| ||| |||||||| |||||  |||| ||U   UUAUAGUAUA AUGUCCGA ACUAUUUUUU ACUUUU UAAA CU UUU  AUACU  G GAUACACAU UUU GAUUCUCU GGUGU  AUUU AGA UA          C        C          U      U    G  C   UG     GC C         G   A        A     AA    G
Stem-loop sequence	GAUAUCAUAUAUACAGGUUAUGAUAAAAAAUUGAGAAUGUUUGGACAAAGUUGUGAGACACUAUGUGUAGAAACCUAAGAGAACUACACAUGAAAUCAUAGAGUUUAAAUGUGGAUCUCUUAGAUUUGUACACAUAGCGCGUCAUAGUUUUCUCGAAAUUUUUUCAUUUUUUUAUCACAGCCUGUACAUAUGAUAUUAU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403220.1	ncRNA:22   GUAUUGGACAUAUAUACUAUAG   1   ||*||||||||*|||||||||| targets:198   CACAACCUGUACAUAUGAUAUC   219 Target Full Sequence	1.5	Sequence 1345 from Patent EP2074227	NA	coding protein	psRNATarget
JB163683.1	ncRNA:22   GUAUUGGACAUAUAUACUAUAG   1   ||*|||||*||||||||||||| targets:198   CACAACCUCUAUAUAUGAUAUC   219 Target Full Sequence	1.0	Sequence 1347 from Patent EP2559767	NA	coding protein	psRNATarget
JB163681.1	ncRNA:22   GUAUUGGACAUAUAUACUAUAG   1   ||*||||||||*|||||||||| targets:198   CACAACCUGUACAUAUGAUAUC   219 Target Full Sequence	1.5	Sequence 1345 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235352.1	ncRNA:22   GUAUUGGACAUAUAUACUAUAG   1   ||*|||||*||||||||||||| targets:198   CACAACCUCUAUAUAUGAUAUC   219 Target Full Sequence	1.0	Sequence 1347 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235350.1	ncRNA:22   GUAUUGGACAUAUAUACUAUAG   1   ||*||||||||*|||||||||| targets:198   CACAACCUGUACAUAUGAUAUC   219 Target Full Sequence	1.5	Sequence 1345 from Patent EP2985353	NA	coding protein	psRNATarget
HI403222.1	ncRNA:22   GUAUUGGACAUAUAUACUAUAG   1   ||*|||||*||||||||||||| targets:198   CACAACCUCUAUAUAUGAUAUC   219 Target Full Sequence	1.0	Sequence 1347 from Patent EP2074227	NA	coding protein	psRNATarget