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BaseInfo

ncRNA ID	osa-miR2118j
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:21654594-21654764 [-]
Reference genome	MSU7
Source	miRBase
Length	22
Mature sequence(if miRNA)	42 - UUCCUGAUGCCUCCCAUUCCUA - 63
Stem-loop(if miRNA)	--   --C   -        GA   -  U        A            -A   GA      --------       UAAG     --    GGUG  AGC   AGG AAGAGGAA  GAG AC CUAAGAGC GUAGGAAUGGGA  CAU  AGGAAA        GCCAAAU    CUCUA  ACCU ||||  |||   ||| ||||||||  ||| || |||||||| ||||||||||||  |||  ||||||        |||||||    |||||  |||C CCAC  UCG   UUC UUCUCCUU  CUC UG GAUUCUUG UAUCCUUACCCU  GUA  UCCUUU        UGGUUUA    GAGGU  UGGU     AA   ACU   A        -G   G  -        A            CC   -G      UAGUAGUC       ----     UA
Stem-loop sequence	GGUGAGCCAGGAAGAGGAAGAGAGACUCUAAGAGCAGUAGGAAUGGGAACAUGAAGGAAAGCCAAAUUAAGCUCUAACCUCUGGUAUUGGAGAUUUGGUCUGAUGAUUUUCCUGAUGCCUCCCAUUCCUAUAGUUCUUAGGUGCUCGUUCCUCUUACUUUCAGCUAACACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK068680.1	ncRNA:22   AUCCUUACCCUCCGUAGUCCUU   1   |||||||||||||||||||||| targets:352   UAGGAAUGGGAGGCAUCAGGAA   373 Target Full Sequence	0.0	Oryza sativa Japonica Group cDNA clone:J013158G01, full insert sequence	NA	coding protein	psRNATarget

Reference

1	PMID:19584097 "Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"; Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH; Genome Res. 19:1429-1440(2009).