Search result

BaseInfo

ncRNA ID	novel_zma_miR993
Species	Zea mays
Class	miRNA
Genome position	Chr6:38112910-38112978 [-]
Reference genome	RefGen_v4
Source	SRR1583943;SRR2638137;SRR2647385;SRR2647389
Length	24
Mature sequence(if miRNA)	1 - AUAUGUCUUCGUUGCAACGCACGG - 24
Stem-loop(if miRNA)	--A                         U  CG U    UGCGUUGCAACGAGGACAUAUAAUA CA  G A    ||||||||||||||||||||||||| ||  |    ACGCAACGUUGCUUCUGUAUAUUAU GU  U A GGC                         -  AU C
Stem-loop sequence	AUGCGUUGCAACGAGGACAUAUAAUAUCACGGUAACUUAUGUAUUAUAUGUCUUCGUUGCAACGCACGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI408611.1	ncRNA:24   GGCACGCAACGUUGCUUCUGUAUA   1   |||||||||||||||=|||||||| targets:7   CCGUGCGUUGCAACGGAGACAUAU   30 Target Full Sequence	1.5	Sequence 6736 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240741.1	ncRNA:24   GGCACGCAACGUUGCUUCUGUAUA   1   |||||||||||||||=|||||||| targets:7   CCGUGCGUUGCAACGGAGACAUAU   30 Target Full Sequence	1.5	Sequence 6736 from Patent EP2985353	NA	coding protein	psRNATarget
JB169072.1	ncRNA:24   GGCACGCAACGUUGCUUCUGUAUA   1   |||||||||||||||=|||||||| targets:7   CCGUGCGUUGCAACGGAGACAUAU   30 Target Full Sequence	1.5	Sequence 6736 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008676484.2	ncRNA:24   GGCACGCAACGUUGCUUCUGUAUA   1   ||||*||||||||||||||||||| targets:1023   CCGUACGUUGCAACGAAGACAUAU   1046 Target Full Sequence	0.0	PREDICTED: Zea mays sialyltransferase-like protein 4 (LOC103650896), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676486.2	ncRNA:24   GGCACGCAACGUUGCUUCUGUAUA   1   ||||*||||||||||||||||||| targets:1046   CCGUACGUUGCAACGAAGACAUAU   1069 Target Full Sequence	0.0	PREDICTED: Zea mays sialyltransferase-like protein 4 (LOC103650896), transcript variant X2, mRNA	NA	coding protein	psRNATarget