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BaseInfo

ncRNA ID	novel_zma_miR989
Species	Zea mays
Class	miRNA
Genome position	Chr3:11781248-11781317 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089711;SRR2089712;SRR2089715;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - AGAAGCUGAACCAAACAGGGGCUA - 24
Stem-loop(if miRNA)	--    AGC         C           CUG   C   GCUU   GUUUGGUUC AGCUUUUGCUU   GGC A   ||||   ||||||||| |||||||||||   ||| G   CGGG   CAAACCAAG UCGAAGACGAG   CUG A AU    -GA         -           ---   A
Stem-loop sequence	GCUUAGCGUUUGGUUCCAGCUUUUGCUUCUGGGCCAGAAGUCGAGCAGAAGCUGAACCAAACAGGGGCUA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008658201.2	ncRNA:24   AUCGGGGACAAACCAAGUCGAAGA   1   *=|||||||||||*|||||||||| targets:1065   AGGCCCCUGUUUGUUUCAGCUUCU   1088 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103635825), mRNA	NA	coding protein	psRNATarget
NM_001174570.1	ncRNA:24   AUCGGGGACAAACCAAGUCGAAGA   1   |=|=*|||||||||||||||||=| targets:1318   UGGUACCUGUUUGGUUCAGCUUUU   1341 Target Full Sequence	1.5	Zea mays uncharacterized LOC100276641 (LOC100276641), transcript variant 1, mRNA	NA	coding protein	psRNATarget
BT062212.1	ncRNA:24   AUCGGGGACAAACCAAGUCGAAGA   1   |=|=*|||||||||||||||||=| targets:1318   UGGUACCUGUUUGGUUCAGCUUUU   1341 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0227M13 mRNA, complete cds	NA	coding protein	psRNATarget
BT019044.1	ncRNA:24   AUCGGGGACAAACCAAGUCGAAGA   1   |||**|||||||||||||||||=| targets:681   UAGGGCCUGUUUGGUUCAGCUUUU   704 Target Full Sequence	1.5	Zea mays clone Contig565.F mRNA sequence	NA	coding protein	psRNATarget
XM_008677961.2	ncRNA:24   AUCGGGGACAAACCAAGUCGAAGA   1   ||-|=|||*||||||||||||||| targets:13   UA-CUCCUCUUUGGUUCAGCUUCU   35 Target Full Sequence	1.0	PREDICTED: Zea mays nascent polypeptide-associated complex subunit alpha, muscle-specific form-like (LOC103652357), mRNA	NA	coding protein	psRNATarget
XM_020549955.1	ncRNA:24   AU-CGGGGACAAACCAAGUCGAAGA   1   ||-||**|||||||||||||||||| targets:3955   UAUGCGGCUGUUUGGUUCAGCUUCU   3979 Target Full Sequence	1.0	PREDICTED: Zea mays Ubiquitin carboxyl-terminal hydrolase family protein (LOC100279310), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_020549954.1	ncRNA:24   AU-CGGGGACAAACCAAGUCGAAGA   1   ||-||**|||||||||||||||||| targets:6127   UAUGCGGCUGUUUGGUUCAGCUUCU   6151 Target Full Sequence	1.0	PREDICTED: Zea mays Ubiquitin carboxyl-terminal hydrolase family protein (LOC100279310), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020551404.1	ncRNA:24   AUCGGGGACAAACCAAGUCGAAGA   1   |=|**=||||||||||||||||=| targets:1392   UGGGGUCUGUUUGGUUCAGCUUUU   1415 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100275481 (si606071d07), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008672391.2	ncRNA:24   AUCGGGGACAAACCAAGUCGAAGA   1   *=|**|||||||||||||||||=| targets:2281   AGGGGCCUGUUUGGUUCAGCUUUU   2304 Target Full Sequence	1.5	PREDICTED: Zea mays probable protein phosphatase 2C 65 (LOC103647898), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008672390.2	ncRNA:24   AUCGGGGACAAACCAAGUCGAAGA   1   *=|**|||||||||||||||||=| targets:2291   AGGGGCCUGUUUGGUUCAGCUUUU   2314 Target Full Sequence	1.5	PREDICTED: Zea mays probable protein phosphatase 2C 65 (LOC103647898), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001136977.1	ncRNA:24   AUCGGGGACAAACCAAGUCGAAGA   1   |||**==||||||||||||||||* targets:1853   UAGGGUUUGUUUGGUUCAGCUUCC   1876 Target Full Sequence	3.0	Zea mays interferon-related developmental regulator family protein / IFRD protein family (cl51637_1), mRNA	NA	coding protein	psRNATarget
BT033657.1	ncRNA:24   AUCGGGGACAAACCAAGUCGAAGA   1   |||**==||||||||||||||||* targets:1853   UAGGGUUUGUUUGGUUCAGCUUCC   1876 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0117G19 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681823.2	ncRNA:24   AUCGGGGACAAACCAAGUCGAAGA   1   ****=*||||||||||||||||=| targets:2661   AUUAUACUGUUUGGUUCAGCUUUU   2684 Target Full Sequence	2.5	PREDICTED: Zea mays kinesin-like protein KIN-6 (LOC103655001), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008681822.2	ncRNA:24   AUCGGGGACAAACCAAGUCGAAGA   1   ****=*||||||||||||||||=| targets:2679   AUUAUACUGUUUGGUUCAGCUUUU   2702 Target Full Sequence	2.5	PREDICTED: Zea mays kinesin-like protein KIN-6 (LOC103655001), transcript variant X1, mRNA	NA	coding protein	psRNATarget