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BaseInfo

ncRNA ID	novel_zma_miR983
Species	Zea mays
Class	miRNA
Genome position	Chr3:23950804-23950862 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089715
Length	24
Mature sequence(if miRNA)	36 - AACUAUUAGUUAGACUGUUUGGAU - 59
Stem-loop(if miRNA)	--             A     UG   --  C   AACUAUUAGUUAG CUGUU  GAU  GU U   ||||||||||||| |||||  |||  ||   UUGAUAAUCAAUC GACGA  UUA  CG U UU             -     UU   AU  G
Stem-loop sequence	AACUAUUAGUUAGACUGUUUGGAUGUCUUGGCUAAUUUUAGCAGCUAACUAAUAGUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_020545827.1	ncRNA:24   UAGGUUUGUCAGAUUGAUUAUCAA   1   ||=|||||||||||=||||||||| targets:975   AUUCAAACAGUCUAGCUAAUAGUU   998 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At2g26790, mitochondrial-like (LOC103641135), transcript variant X11, mRNA	NA	coding protein	psRNATarget
DQ244933.1	ncRNA:24   UAGGUUUGUCAGAUUGAUUAUCAA   1   |||||||=||||||=||||||||| targets:697   AUCCAAAUAGUCUAGCUAAUAGUU   720 Target Full Sequence	2.5	Zea mays clone 11846 mRNA sequence	NA	coding protein	psRNATarget
XM_020538936.1	ncRNA:24   UAGGUUUGUCAGAUU-GAUUAUCAA   1   |||=|||||||||||-||||||||| targets:1317   AUCUAAACAGUCUAAGCUAAUAGUU   1341 Target Full Sequence	3.0	PREDICTED: Zea mays peptide transporter PTR2 (LOC100281420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020545045.1	ncRNA:24   UAGGUUUGUCAGAUUGAUUAUCAA   1   |||||||||*||||=||||||||| targets:715   AUCCAAACAAUCUAGCUAAUAGUU   738 Target Full Sequence	2.5	PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA	NA	coding protein	psRNATarget
BT066299.1	ncRNA:24   UAGGUUUGUCAGAUUGAUUAUCAA   1   |||||||||*||||=||||||||| targets:1246   AUCCAAACACUCUAGCUAAUAGUU   1269 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0189M13 mRNA, complete cds	NA	coding protein	psRNATarget
EU956751.1	ncRNA:24   UAGGUUUGUCAGAUUGAUUAUCAA   1   |||||||||*||||=||||||||| targets:727   AUCCAAACAAUCUAGCUAAUAGUU   750 Target Full Sequence	2.5	Zea mays clone 1572581 mRNA sequence	NA	coding protein	psRNATarget
XM_020543506.1	ncRNA:24   UAGGUUUGUCAGAUUGAUUAUCAA   1   |||||||||*||||=||||||||| targets:545   AUCCAAACAAUCUAGCUAAUAGUU   568 Target Full Sequence	2.5	PREDICTED: Zea mays putative RING zinc finger domain superfamily protein (LOC100216754), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679129.2	ncRNA:24   UAGGUUUGUCAGAUUGAUUAUCAA   1   =||=|||=||||||*||||||||| targets:1443   GUCUAAAUAGUCUAUCUAAUAGUU   1466 Target Full Sequence	2.5	PREDICTED: Zea mays auxin response factor 75 (LOC100283409), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020541848.1	ncRNA:24   UA-GGUUUGUCAGAUUGAUUAUCAA   1   ||-=||||||*||||=||||||||| targets:9144   AUAUCAAACACUCUAGCUAAUAGUU   9168 Target Full Sequence	2.5	PREDICTED: Zea mays putative bZIP transcription factor superfamily protein (bZIP108), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU962739.1	ncRNA:20   UUUGUCAGAUUGAUUAUCAA   1   |||||*||||=||||||||| targets:1   AAACACUCUAGCUAAUAGUU   20 Target Full Sequence	2.5	Zea mays clone 245112 mRNA sequence	NA	coding protein	psRNATarget