ncRNA ID | osa-miR2118i |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr4:21652388-21652568 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 39 - UUCCUAGUGCCUCCCAUUCCUA - 60 |
Stem-loop(if miRNA) |
      ---             AAAUU                 C         -A    G        - ---U   GC      CU G     U GCAAGU   AAGGAAGAGGAAG     GAGUGUCUAAGGGCAAU GGAAUGGGA  CAUU AGGAAAGC C    ACA  GUCUUU  C UCCAC A ||||||   |||||||||||||     ||||||||||||||||| |||||||||  |||| |||||||| |    |||  ||||||  | ||||| G CGUUCG   UUCCUUCUCCUUC     CUCAUAGAUUCCUGUUA CCUUACCCU  GUGA UCCUUUUG G    UGU  UAGAAA  G GGGUG A       ACU             -----                 U         CC    -        U UUUU   AA      UG G     A |
Stem-loop sequence | GCAAGUAAGGAAGAGGAAGAAAUUGAGUGUCUAAGGGCAAUCGGAAUGGGAACAUUGAGGAAAGCCUACAGCGUCUUUCUCGUCCACUAGAAGUGGGGGGUAAAGAUAAUGUUUUUGUGUUUUCCUAGUGCCUCCCAUUCCUAUUGUCCUUAGAUACUCCUUCCUCUUCCUUUCAGCUUGC |
1 | PMID:19584097
"Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"; Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH; Genome Res. 19:1429-1440(2009). |