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BaseInfo

ncRNA ID osa-miR2118i
Species Oryza sativa
Class miRNA
Genome position Chr4:21652388-21652568 [-]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 39 - UUCCUAGUGCCUCCCAUUCCUA - 60
Stem-loop(if miRNA)       ---             AAAUU                 C         -A    G        - ---U   GC      CU G     U
GCAAGU   AAGGAAGAGGAAG     GAGUGUCUAAGGGCAAU GGAAUGGGA  CAUU AGGAAAGC C    ACA  GUCUUU  C UCCAC A
||||||   |||||||||||||     ||||||||||||||||| |||||||||  |||| |||||||| |    |||  ||||||  | ||||| G
CGUUCG   UUCCUUCUCCUUC     CUCAUAGAUUCCUGUUA CCUUACCCU  GUGA UCCUUUUG G    UGU  UAGAAA  G GGGUG A
      ACU             -----                 U         CC    -        U UUUU   AA      UG G     A
Stem-loop sequence GCAAGUAAGGAAGAGGAAGAAAUUGAGUGUCUAAGGGCAAUCGGAAUGGGAACAUUGAGGAAAGCCUACAGCGUCUUUCUCGUCCACUAGAAGUGGGGGGUAAAGAUAAUGUUUUUGUGUUUUCCUAGUGCCUCCCAUUCCUAUUGUCCUUAGAUACUCCUUCCUCUUCCUUUCAGCUUGC

Reference

1 PMID:19584097
"Clusters and superclusters of phased small RNAs in the developing inflorescence of rice";
Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH;
Genome Res. 19:1429-1440(2009).