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BaseInfo

ncRNA ID	novel_zma_miR970
Species	Zea mays
Class	miRNA
Genome position	Chr3:130503151-130503306 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089712;SRR2089713;SRR2089714;SRR2089715;SRR5451003;SRR5451004;SRR2089700;SRR2089704;SRR2089706;SRR2089707;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - GAUGCUCUGGAUAAUUUGAUUGCA - 24
Stem-loop(if miRNA)	--        CG   UG UA                    AUG   GUUAUUUUAUAUUUAAGCCCUUCCACCUAAAA   CAAUCAAG  AUC  G  CAUCCGAUCUAGAUCUAAUG   ACU                                C   ||||||||  |||  |  ||||||||||||||||||||   |||                                A   GUUAGUUU  UAG  C  GUAGGUUAGAUCUAGGUUGC   AAG                                U AC        AA   GU UC                    -CA   UAUACCUUCCCCAAUUUUCAUUUUAUCCAUGA
Stem-loop sequence	CAAUCAAGCGAUCUGGUACAUCCGAUCUAGAUCUAAUGAUGACUGUUAUUUUAUAUUUAAGCCCUUCCACCUAAAACAUAGUACCUAUUUUACUUUUAACCCCUUCCAUAUGAAACCGUUGGAUCUAGAUUGGAUGCUCUGGAUAAUUUGAUUGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008676294.2	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||||||||||| targets:1879   UGCAAUCAAACUAUCCAGAGCAUC   1902 Target Full Sequence	1.0	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X8, mRNA	NA	coding protein	psRNATarget
XM_008676292.2	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||||||||||| targets:1706   UGCAAUCAAACUAUCCAGAGCAUC   1729 Target Full Sequence	1.0	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676293.2	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||||||||||| targets:1534   UGCAAUCAAACUAUCCAGAGCAUC   1557 Target Full Sequence	1.0	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008661851.2	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||||||||||| targets:656   UGCAAUCAAACUAUCCAGAGCAUC   679 Target Full Sequence	1.0	PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008661850.2	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||||||||||| targets:643   UGCAAUCAAACUAUCCAGAGCAUC   666 Target Full Sequence	1.0	PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU954880.1	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||||||||||| targets:642   UGCAAUCAAACUAUCCAGAGCAUC   665 Target Full Sequence	1.0	Zea mays clone 1489976 ubiquitin-fusion protein mRNA, complete cds	NA	coding protein	psRNATarget
EU971778.1	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||||||||||| targets:628   UGCAAUCAAACUAUCCAGAGCAUC   651 Target Full Sequence	1.0	Zea mays clone 370490 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008653636.2	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||=|||||||| targets:2941   UGCAAUCAAACUAUCUAGAGCAUC   2964 Target Full Sequence	2.5	PREDICTED: Zea mays leucine-rich repeat extensin-like protein 3 (LOC103631839), mRNA	NA	coding protein	psRNATarget
XM_020551352.1	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||||||||||= targets:45   UGCAAUCAAACUAUCCAGAGCAUU   68 Target Full Sequence	2.0	PREDICTED: Zea mays putative glutathione S-transferase family protein (LOC100272773), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020538318.1	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   |*||||||||*||||||||||||| targets:36   UACAAUCAAACUAUCCAGAGCAUC   59 Target Full Sequence	1.0	PREDICTED: Zea mays zinc finger CCCH domain-containing protein 45 (LOC103626282), mRNA	NA	coding protein	psRNATarget
XM_008676189.2	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   |*||||||||*||||||||||||| targets:849   UACAAUCAAACUAUCCAGAGCAUC   872 Target Full Sequence	1.0	PREDICTED: Zea mays uncharacterized LOC103650617 (LOC103650617), mRNA	NA	coding protein	psRNATarget
HI403291.1	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||**|||||||||||| targets:36   UGCAAUCAAACCAUCCAGAGCAUC   59 Target Full Sequence	2.5	Sequence 1416 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235421.1	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||**|||||||||||| targets:36   UGCAAUCAAACCAUCCAGAGCAUC   59 Target Full Sequence	2.5	Sequence 1416 from Patent EP2985353	NA	coding protein	psRNATarget
JB163752.1	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||**|||||||||||| targets:36   UGCAAUCAAACCAUCCAGAGCAUC   59 Target Full Sequence	2.5	Sequence 1416 from Patent EP2559767	NA	coding protein	psRNATarget
JB163561.1	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||||||*|||| targets:22   UGCAAUCAAACUAUCCAGAACAUC   45 Target Full Sequence	2.5	Sequence 1225 from Patent EP2559767	NA	coding protein	psRNATarget
HI403100.1	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||||||*|||| targets:22   UGCAAUCAAACUAUCCAGAACAUC   45 Target Full Sequence	2.5	Sequence 1225 from Patent EP2074227	NA	coding protein	psRNATarget
JB163438.1	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||||||*|||| targets:22   UGCAAUCAAACUAUCCAGAACAUC   45 Target Full Sequence	2.5	Sequence 1102 from Patent EP2559767	NA	coding protein	psRNATarget
HI402977.1	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||||||*|||| targets:22   UGCAAUCAAACUAUCCAGAACAUC   45 Target Full Sequence	2.5	Sequence 1102 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235107.1	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||||||*|||| targets:22   UGCAAUCAAACUAUCCAGAACAUC   45 Target Full Sequence	2.5	Sequence 1102 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235230.1	ncRNA:24   ACGUUAGUUUAAUAGGUCUCGUAG   1   ||||||||||*||||||||*|||| targets:22   UGCAAUCAAACUAUCCAGAACAUC   45 Target Full Sequence	2.5	Sequence 1225 from Patent EP2985353	NA	coding protein	psRNATarget