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BaseInfo

ncRNA ID	novel_zma_miR969
Species	Zea mays
Class	miRNA
Genome position	Chr6:118536492-118536582 [-]
Reference genome	RefGen_v4
Source	SRR1583943;SRR1583944;SRR5100255
Length	24
Mature sequence(if miRNA)	1 - CUCCAAGAGACUAGUUAAAUGGCU - 24
Stem-loop(if miRNA)	--           AC  A   A         -----------U    U UU   CUAUUUAGCUA  CU UUG AGAUGCUCU            AGAC C  A   |||||||||||  || ||| |||||||||            |||| |   GGUAAAUUGAU  GA AAC UCUACGAGA            UCUG G  G UC           CA  G   C         UUCCCGUAGUGU    U UU
Stem-loop sequence	CUAUUUAGCUAACCUAUUGAAGAUGCUCUUAGACUCUUAGUUGUGUCUUGUGAUGCCCUUAGAGCAUCUCCAAGAGACUAGUUAAAUGGCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY109644.1	ncRNA:24   UCGGUAAAUUGAUCAGAGAACCUC   1   |||||||||=|||||||||||||| targets:263   AGCCAUUUAGCUAGUCUCUUGGAG   286 Target Full Sequence	1.0	Zea mays CL12102_-1 mRNA sequence	NA	coding protein	psRNATarget
NM_001350271.1	ncRNA:24   UCGGUAAAUUGAUCAGAGAACCUC   1   ||=||||||||||||||||||||| targets:1504   AGUCAUUUAACUAGUCUCUUGGAG   1527 Target Full Sequence	0.0	Zea mays uncharacterized LOC100278902 (LOC100278902), mRNA	NA	coding protein	psRNATarget
EU966387.1	ncRNA:24   UCGGUAAAUUGAUCAGAGAACCUC   1   ||=||||||=|||||||||||*|| targets:1202   AGUCAUUUAGCUAGUCUCUUGAAG   1225 Target Full Sequence	2.5	Zea mays clone 294069 mRNA sequence	NA	coding protein	psRNATarget
XM_008678711.2	ncRNA:24   UCGGUAAAUUGAUCAGAGAACCUC   1   |*||||*||*|||||||||||||| targets:1283   AACCAUAUACCUAGUCUCUUGGAG   1306 Target Full Sequence	2.0	PREDICTED: Zea mays putative inactive dual specificity protein phosphatase-like (LOC100275792), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020551412.1	ncRNA:24   UCGGUAAAUUGAUCAGAGAACCUC   1   |*||||*||*|||||||||||||| targets:1385   AACCAUAUACCUAGUCUCUUGGAG   1408 Target Full Sequence	2.0	PREDICTED: Zea mays putative inactive dual specificity protein phosphatase-like (LOC100275792), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008678709.2	ncRNA:24   UCGGUAAAUUGAUCAGAGAACCUC   1   |*||||*||*|||||||||||||| targets:1460   AACCAUAUACCUAGUCUCUUGGAG   1483 Target Full Sequence	2.0	PREDICTED: Zea mays putative inactive dual specificity protein phosphatase-like (LOC100275792), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678710.2	ncRNA:24   UCGGUAAAUUGAUCAGAGAACCUC   1   |*||||*||*|||||||||||||| targets:1464   AACCAUAUACCUAGUCUCUUGGAG   1487 Target Full Sequence	2.0	PREDICTED: Zea mays putative inactive dual specificity protein phosphatase-like (LOC100275792), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008678712.2	ncRNA:24   UCGGUAAAUUGAUCAGAGAACCUC   1   |*||||*||*|||||||||||||| targets:1468   AACCAUAUACCUAGUCUCUUGGAG   1491 Target Full Sequence	2.0	PREDICTED: Zea mays putative inactive dual specificity protein phosphatase-like (LOC100275792), transcript variant X4, mRNA	NA	coding protein	psRNATarget
EU972497.1	ncRNA:19   AAAUUGAUCAGAGAACCUC   1   |*||=|||||||||||||| targets:1   UAUAGCUAGUCUCUUGGAG   19 Target Full Sequence	2.0	Zea mays clone 382264 mRNA sequence	NA	coding protein	psRNATarget