Search result

BaseInfo

ncRNA ID	osa-miR5522
Species	Oryza sativa
Class	miRNA
Genome position	Chr4:21650324-21650436 [+]
Reference genome	MSU7
Source	miRBase
Length	21
Mature sequence(if miRNA)	11 - AACAAUAGGAAUGGGAGGCAU - 31
Stem-loop(if miRNA)	AGCAC      A AA            G   -U        U      CAAGUC    CA      CUAAGA C  UAGGAAUGGGAG CAU  AGGAAAGU GCAAGC      UCCA  A      |||||| |  |||||||||||| |||  |||||||| ||||||      ||||      GAUUCU G  AUCCUUACCCUU GUA  UCCUUUCA CGUUCG      AGGU  A UCCCA      C AC            -   CC        -      ------    AC
Stem-loop sequence	AGCACCUAAGAACAAUAGGAAUGGGAGGCAUUAGGAAAGUUGCAAGCCAAGUCUCCACAAACAUGGAGCUUGCACUUUCCUCCAUGUUCCCAUUCCUACAGCUCUUAGACCCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AK107452.1	ncRNA:21   UACGGAGGGUAAGGAUAACAA   1   |||||||||||||||||*||| targets:183   AUGCCUCCCAUUCCUAUCGUU   203 Target Full Sequence	1.5	Oryza sativa Japonica Group cDNA clone:002-128-C06, full insert sequence	NA	coding protein	psRNATarget
XM_015795183.1	ncRNA:21   UACGGAGGGUAAGGAUAACAA   1   =*|||||||||||*||||||* targets:6185   GAGCCUCCCAUUCAUAUUGUC   6205 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group starch synthase 3, chloroplastic/amyloplastic (LOC9268758), transcript variant X2, mRNA	starch synthase 3, chloroplastic/amyloplastic(LOC9268758)	coding protein	psRNATarget
XM_015795184.1	ncRNA:21   UACGGAGGGUAAGGAUAACAA   1   =*|||||||||||*||||||* targets:5962   GAGCCUCCCAUUCAUAUUGUC   5982 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group starch synthase 3, chloroplastic/amyloplastic (LOC9268758), transcript variant X3, mRNA	starch synthase 3, chloroplastic/amyloplastic(LOC9268758)	coding protein	psRNATarget
XM_015795182.1	ncRNA:21   UACGGAGGGUAAGGAUAACAA   1   =*|||||||||||*||||||* targets:4670   GAGCCUCCCAUUCAUAUUGUC   4690 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group starch synthase 3, chloroplastic/amyloplastic (LOC9268758), transcript variant X1, mRNA	starch synthase 3, chloroplastic/amyloplastic(LOC9268758)	coding protein	psRNATarget
XM_015795185.1	ncRNA:21   UACGGAGGGUAAGGAUAACAA   1   =*|||||||||||*||||||* targets:4447   GAGCCUCCCAUUCAUAUUGUC   4467 Target Full Sequence	2.5	PREDICTED: Oryza sativa Japonica Group starch synthase 3, chloroplastic/amyloplastic (LOC9268758), transcript variant X4, mRNA	starch synthase 3, chloroplastic/amyloplastic(LOC9268758)	coding protein	psRNATarget

Reference

1	PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa"; Wei LQ, Yan LF, Wang T; Genome Biol. 12:R53(2011).