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BaseInfo

ncRNA ID	novel_zma_miR954
Species	Zea mays
Class	miRNA
Genome position	Chr3:231491039-231491149 [-]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	88 - AACUCUGGGUGAAGCAGCUCUGCU - 111
Stem-loop(if miRNA)	--     UG  U        U   C  -UA  U      -      CUCAUA   G  GG   AACUC  GG GAAGCAGC CUG UC   GA UUUAGA UUGUUU      ACC GU  C   |||||  || |||||||| ||| ||   || |||||| ||||||      ||| ||  G   UUGAG  UU UUUUGUUG GAU AG   CU AAAUCU AAUAAA      UGG CA  A UU     GU  -        -   C  UAC  U      C      ------   G  GU
Stem-loop sequence	AACUCUGGGUGAAGCAGCUCUGCUCUAGAUUUUAGAUUGUUUCUCAUAACCGGUGGCGAUGACGGGUAAAUAACUCUAAAUUCCAUGACUAGGUUGUUUUUUUGGAGUUUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008670341.2	ncRNA:24   UCGUCUCGACGAAGUGGGUCUCAA   1   ||=||||||||||||=|||||||| targets:1891   AGUAGAGCUGCUUCAUCCAGAGUU   1914 Target Full Sequence	1.5	PREDICTED: Zea mays bromodomain 4 (LOC100502312), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670340.2	ncRNA:24   UCGUCUCGACGAAGUGGGUCUCAA   1   ||=||||||||||||=|||||||| targets:1941   AGUAGAGCUGCUUCAUCCAGAGUU   1964 Target Full Sequence	1.5	PREDICTED: Zea mays bromodomain 4 (LOC100502312), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008670339.2	ncRNA:24   UCGUCUCGACGAAGUGGGUCUCAA   1   ||=||||||||||||=|||||||| targets:2016   AGUAGAGCUGCUUCAUCCAGAGUU   2039 Target Full Sequence	1.5	PREDICTED: Zea mays bromodomain 4 (LOC100502312), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT084823.2	ncRNA:24   UCGUCUCGACGAAGUGGGUCUCAA   1   ||||||||||||*||||||||||| targets:529   AGCAGAGCUGCUCCACCCAGAGUU   552 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0187L14 mRNA, complete cds	NA	coding protein	psRNATarget