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BaseInfo

ncRNA ID	novel_zma_miR952
Species	Zea mays
Class	miRNA
Genome position	Chr3:233867756-233867807 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR5451005;SRR5451006
Length	24
Mature sequence(if miRNA)	1 - GGCCCACAGGCACGGACUGUCCGG - 24
Stem-loop(if miRNA)	--     AC    A     U     G   GGCCC  AGGC CGGAC GUCCG A   |||||  |||| ||||| ||||| C   CCGGG  UCCG GCCUG CAGGC C GG     AC    -     C     A
Stem-loop sequence	GGCCCACAGGCACGGACUGUCCGGACCACGGACCGUCCGGCCUCAGGGCCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EU949855.1	ncRNA:24   GGCCUGUCAGGCACGGACACCCGG   1   ||||||||||||*||||||||||| targets:411   CCGGACAGUCCGCGCCUGUGGGCC   434 Target Full Sequence	1.5	Zea mays clone 449025 mRNA sequence	NA	coding protein	psRNATarget
NM_001149438.1	ncRNA:24   GGCCUGUCAGGCACGGACACCCGG   1   ||||||||||||*||||||||||| targets:1920   CCGGACAGUCCGCGCCUGUGGGCC   1943 Target Full Sequence	1.5	Zea mays uncharacterized LOC100275341 (LOC100275341), mRNA	NA	coding protein	psRNATarget
EU955374.1	ncRNA:24   GGCCUGUCAGGCACGGACACCCGG   1   ||||||||||||*||||||||||| targets:1920   CCGGACAGUCCGCGCCUGUGGGCC   1943 Target Full Sequence	1.5	Zea mays clone 1529849 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU974386.1	ncRNA:24   GGCCUGUCAGGCACGGACACCCGG   1   ||||||=|||||*||||||||||| targets:845   CCGGACGGUCCGCGCCUGUGGGCC   868 Target Full Sequence	2.5	Zea mays clone 447822 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001174686.1	ncRNA:24   GGCCUGUCAGGCACGGACACCCGG   1   ||||||=|||||*||||||||||| targets:1436   CCGGACGGUCCGCGCCUGUGGGCC   1459 Target Full Sequence	2.5	Zea mays Cysteine-rich receptor-like protein kinase 10 (LOC100381909), mRNA	NA	coding protein	psRNATarget
BT062568.1	ncRNA:24   GGCCUGUCAGGCACGGACACCCGG   1   ||||||=|||||*||||||||||| targets:1436   CCGGACGGUCCGCGCCUGUGGGCC   1459 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0315C08 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008679932.1	ncRNA:24   GGCCUGUCAGGCACGGACACCCGG   1   |||||||||=||*||||||||||| targets:1828   CCGGACAGUUCGCGCCUGUGGGCC   1851 Target Full Sequence	2.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020552482.1	ncRNA:24   GGCCUGUCAGGCACGGACACCCGG   1   |||||||||=||*||||||||||| targets:1864   CCGGACAGUUCGCGCCUGUGGGCC   1887 Target Full Sequence	2.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008658262.2	ncRNA:24   GGCCUGUCAGGCACGGACACCCGG   1   ||||||||||||*||||||||||= targets:2668   CCGGACAGUCCGCGCCUGUGGGCU   2691 Target Full Sequence	2.5	PREDICTED: Zea mays CASC3/Barentsz eIF4AIII binding (LOC103635880), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008658263.2	ncRNA:24   GGCCUGUCAGGCACGGACACCCGG   1   ||||||||||||*||||||||||= targets:2769   CCGGACAGUCCGCGCCUGUGGGCU   2792 Target Full Sequence	2.5	PREDICTED: Zea mays CASC3/Barentsz eIF4AIII binding (LOC103635880), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008679933.2	ncRNA:24   GGCCUGUCAGGCACGGACACCCGG   1   |||||||||=||*||||||||||| targets:3658   CCGGACAGUUCGCGCCUGUGGGCC   3681 Target Full Sequence	2.5	PREDICTED: Zea mays long chain base biosynthesis protein 2a (LOC103652945), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU943239.1	ncRNA:24   GGCCUGUCAGGCACGGACACCCGG   1   ||*|||=|||||*||||||||||| targets:323   CCAGACGGUCCGCGCCUGUGGGCC   346 Target Full Sequence	2.5	Zea mays clone 1589479 mRNA sequence	NA	coding protein	psRNATarget
XM_008646370.2	ncRNA:24   GGC---CUGUCAGGCACGGACACCCGG   1   =||---|=|||*|||||||*||||||| targets:239   UCGCACGGCAGCCCGUGCCCGUGGGCC   265 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC103625972), mRNA	NA	coding protein	psRNATarget
EU973690.1	ncRNA:24   GGC---CUGUCAGGCACGGACACCCGG   1   =||---|=|||*|||||||*||||||| targets:235   UCGCACGGCAGCCCGUGCCCGUGGGCC   261 Target Full Sequence	2.5	Zea mays clone 406641 mRNA sequence	NA	coding protein	psRNATarget