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BaseInfo

ncRNA ID	novel_zma_miR949
Species	Zea mays
Class	miRNA
Genome position	Chr3:220669200-220669270 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089711;SRR2089712;SRR2089715;SRR2287159;SRR2287162;SRR2287164;SRR5451004;SRR5451006;SRR2089698;SRR2089699;SRR2089702;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - AUAGACUAUGGCGCCGAGGUACGU - 24
Stem-loop(if miRNA)	-AU   -             G    UGCU   -    C    AGA CUAUGGCGCCGAG UACG    GCG CUGG A    ||| ||||||||||||| ||||    ||| |||| C    UCU GAUACCGCGGCUC GUGC    UGC GGCC A AGU   A             -    ----   A    C
Stem-loop sequence	AUAGACUAUGGCGCCGAGGUACGUGCUGCGCUGGCACACCCGGACGUCGUGCUCGGCGCCAUAGAUCUUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008666663.2	ncRNA:24   UGCAUGGAGCCGCGGUAUCAGAUA   1   |||||||||||||||||||*|||| targets:860   ACGUACCUCGGCGCCAUAGCCUAU   883 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103643463), mRNA	NA	coding protein	psRNATarget
XM_020541199.1	ncRNA:24   UGCAUGGAGCCGCGGUAUCAGAUA   1   |||*|||||||||||||||*|||| targets:1300   ACGCACCUCGGCGCCAUAGCCUAU   1323 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020541198.1	ncRNA:24   UGCAUGGAGCCGCGGUAUCAGAUA   1   |||*|||||||||||||||*|||| targets:1298   ACGCACCUCGGCGCCAUAGCCUAU   1321 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC109940862), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008655193.2	ncRNA:24   UGCAUGGAGCCGCGGUAUCAGAUA   1   |||*|||||||||||||||*|||| targets:1357   ACGCACCUCGGCGCCAUAGCCUAU   1380 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008655192.2	ncRNA:24   UGCAUGGAGCCGCGGUAUCAGAUA   1   |||*|||||||||||||||*|||| targets:1357   ACGCACCUCGGCGCCAUAGCCUAU   1380 Target Full Sequence	1.5	PREDICTED: Zea mays protein trichome birefringence-like 10 (LOC103633510), transcript variant X1, mRNA	NA	coding protein	psRNATarget
LQ238045.1	ncRNA:24   UGCA-UGGAGCCGCGGUAUCAGAUA   1   ==||-||||||||||||*||||||| targets:90   GUGUUACCUCGGCGCCACAGUCUAU   114 Target Full Sequence	1.5	Sequence 4040 from Patent EP2985353	NA	coding protein	psRNATarget
HI405915.1	ncRNA:24   UGCA-UGGAGCCGCGGUAUCAGAUA   1   ==||-||||||||||||*||||||| targets:90   GUGUUACCUCGGCGCCACAGUCUAU   114 Target Full Sequence	1.5	Sequence 4040 from Patent EP2074227	NA	coding protein	psRNATarget
JB166376.1	ncRNA:24   UGCA-UGGAGCCGCGGUAUCAGAUA   1   ==||-||||||||||||*||||||| targets:90   GUGUUACCUCGGCGCCACAGUCUAU   114 Target Full Sequence	1.5	Sequence 4040 from Patent EP2559767	NA	coding protein	psRNATarget