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BaseInfo

ncRNA ID	novel_zma_miR940
Species	Zea mays
Class	miRNA
Genome position	Chr3:15832056-15832125 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089711;SRR2089714;SRR5105961
Length	24
Mature sequence(if miRNA)	1 - AGCCCCUGCGUCAGGUCGCGGACC - 24
Stem-loop(if miRNA)	--A  - C   C      U       C     --       GC C CUG GUCAGG CGCGGAC GUCCG  GCCC    || | ||| |||||| ||||||| |||||  |||U    CG G GAC CAGUCC GCGCCUG CAGGC  CGGA CCA  A A   -      -       C     GU
Stem-loop sequence	AGCCCCUGCGUCAGGUCGCGGACCGUCCGGCCCUAGGCUGCGGACCGUCCGCGCCUGACCAGAGAGCACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ049111.1	ncRNA:24   CCAGGCGCUGGACUGCGUCCCCGA   1   |||||||||||||=|||||||||| targets:32   GGUCCGCGACCUGGCGCAGGGGCU   55 Target Full Sequence	1.5	TSA: Zea mays contig50229, mRNA sequence	NA	coding protein	psRNATarget
BT061906.1	ncRNA:24   CCAGGCGCUGGACUGCGUCCCCGA   1   |||||||||||||=|||||||||| targets:221   GGUCCGCGACCUGGCGCAGGGGCU   244 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0196M13 mRNA, complete cds	NA	coding protein	psRNATarget
BT034345.1	ncRNA:24   CCAGGCGCUGGACUGCGUCCCCGA   1   |||||||||||||=|||||||||| targets:693   GGUCCGCGACCUGGCGCAGGGGCU   716 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0009F02 mRNA, complete cds	NA	coding protein	psRNATarget
BT064749.1	ncRNA:24   CCAGGCGCUGGACUGCGUCCCCGA   1   |||||||||||||=|||||||||| targets:1689   GGUCCGCGACCUGGCGCAGGGGCU   1712 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0101G18 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175289.1	ncRNA:24   CCAGGCGCUGGACUGCGUCCCCGA   1   |||||||||||||=|||||||||| targets:1689   GGUCCGCGACCUGGCGCAGGGGCU   1712 Target Full Sequence	1.5	Zea mays uncharacterized LOC100382557 (LOC100382557), mRNA	NA	coding protein	psRNATarget
EZ099059.1	ncRNA:24   CCAGGCGCUGGACUGCGUCCCCGA   1   |||||||||||||=|||||||||* targets:36   GGUCCGCGACCUGGCGCAGGGGCA   59 Target Full Sequence	2.5	TSA: Zea mays contig34714, mRNA sequence	NA	coding protein	psRNATarget
NM_001310588.1	ncRNA:24   CCAGGCGCUGGACUGCGUCCCCGA   1   ||||||||||||||||||*||||| targets:1378   GGUCCGCGACCUGACGCAUGGGCU   1401 Target Full Sequence	1.5	Zea mays uncharacterized LOC100272476 (IDP716), mRNA	NA	coding protein	psRNATarget
BT038788.1	ncRNA:24   CCAGGCGCUGGACUGCGUCCCCGA   1   ||||||||||||||||||*||||| targets:1460   GGUCCGCGACCUGACGCAUGGGCU   1483 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0325P03 mRNA, complete cds	NA	coding protein	psRNATarget