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BaseInfo

ncRNA ID novel_zma_miR939
Species Zea mays
Class miRNA
Genome position Chr3:178405128-178405178 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR2089711;SRR2089714;SRR1997865;SRR5451004;SRR1997866;SRR5451005
Length 24
Mature sequence(if miRNA) 1 - AGGUGCACCGGACUGUCCGAUGGU - 24
Stem-loop(if miRNA) --A            --      A  
   GGUGCACCGGAC  UGUCCG UGG
   ||||||||||||  |||||| ||U
   CCGCGUGGUCUG  ACAGGC ACG
GGA            UG      C  
Stem-loop sequence AGGUGCACCGGACUGUCCGAUGGUGCACCGGACAGUGUCUGGUGCGCCAGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
HI409440.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  ||||*||||||||||||||||||*
targets:36   ACCACCGGACAGUCCGGUGCACCC   59

1.0 Sequence 7565 from Patent EP2074227 NA coding protein psRNATarget
LQ241570.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  ||||*||||||||||||||||||*
targets:36   ACCACCGGACAGUCCGGUGCACCC   59

1.0 Sequence 7565 from Patent EP2985353 NA coding protein psRNATarget
JB169901.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  ||||*||||||||||||||||||*
targets:36   ACCACCGGACAGUCCGGUGCACCC   59

1.0 Sequence 7565 from Patent EP2559767 NA coding protein psRNATarget
LQ241997.1
ncRNA:24   UG-GUAGCCUGUCAGGCCACGUGGA   1
  ||-|||||||||||=|||||||||*
targets:60   ACUCAUCGGACAGUUCGGUGCACCA   84

2.5 Sequence 7992 from Patent EP2985353 NA coding protein psRNATarget
HI409867.1
ncRNA:24   UG-GUAGCCUGUCAGGCCACGUGGA   1
  ||-|||||||||||=|||||||||*
targets:60   ACUCAUCGGACAGUUCGGUGCACCA   84

2.5 Sequence 7992 from Patent EP2074227 NA coding protein psRNATarget
JB170328.1
ncRNA:24   UG-GUAGCCUGUCAGGCCACGUGGA   1
  ||-|||||||||||=|||||||||*
targets:60   ACUCAUCGGACAGUUCGGUGCACCA   84

2.5 Sequence 7992 from Patent EP2559767 NA coding protein psRNATarget
BT038885.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  =|||*||||||||||||||||||*
targets:1033   GCCACCGGACAGUCCGGUGCACCG   1056

1.0 Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds NA coding protein psRNATarget
BT038885.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  =*|=*|||||||||||||||*||*
targets:865   GGCGCCGGACAGUCCGGUGCUCCA   888

2.5 Zea mays full-length cDNA clone ZM_BFb0337O17 mRNA, complete cds NA coding protein psRNATarget
EU968231.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  =|||*||||||||||||||||||*
targets:1404   GCCACCGGACAGUCCGGUGCACCG   1427

1.0 Zea mays clone 317172 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU968231.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  =*|=*|||||||||||||||*||*
targets:1236   GGCGCCGGACAGUCCGGUGCUCCA   1259

2.5 Zea mays clone 317172 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
EU940831.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  ||||*||||||||||||||=|||*
targets:539   ACCACCGGACAGUCCGGUGUACCA   562

2.5 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
EU940831.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||||||||||||||**
targets:395   CUCACCGGACAGUCCGGUGCACAC   418

2.5 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
EU940831.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  |*||*|||||||||||||||||**
targets:184   AGCACCGGACAGUCCGGUGCACAC   207

2.5 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
NM_001349964.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  =|||*||||||||||||||||||*
targets:2998   GCCACCGGACAGUCCGGUGCACCC   3021

1.0 Zea mays uncharacterized LOC100278112 (IDP592), mRNA NA coding protein psRNATarget
BT066461.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*||||||||||||||||||*
targets:711   CUCACCGGACAGUCCGGUGCACCA   734

1.0 Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds NA coding protein psRNATarget
BT068112.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||||||||||||||**
targets:586   CUCACCGGACAGUCCGGUGCACAC   609

2.5 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT068112.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  ||||*|||||||||||||||*||*
targets:730   ACCACCGGACAGUCCGGUGCUCCC   753

2.5 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT069634.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||*||||||||||*||
targets:725   UACACCGGACUGUCCGGUGCAACU   748

2.5 Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds NA coding protein psRNATarget
NM_001176828.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||*||||||||||*||
targets:725   UACACCGGACUGUCCGGUGCAACU   748

2.5 Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*||||||||||||||=||||
targets:627   CACACCGGACAGUCCGGUGUACCU   650

1.5 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||||||||||||||**
targets:722   CUCACCGGACAGUCCGGUGCACAC   745

2.5 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||||**
targets:501   CGCACCGGACAGUCCGGUGCACAC   524

2.5 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||*||*
targets:844   CACACCGGACAGUCCGGUGCCCCA   867

2.5 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
BT061141.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*||||||||||||||=||||
targets:627   CACACCGGACAGUCCGGUGUACCU   650

1.5 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||||||||||||||**
targets:722   CUCACCGGACAGUCCGGUGCACAC   745

2.5 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||||**
targets:501   CGCACCGGACAGUCCGGUGCACAC   524

2.5 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||*||*
targets:844   CACACCGGACAGUCCGGUGCCCCA   867

2.5 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
NM_001176621.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*||||||||||||||||||*
targets:693   CUCACCGGACAGUCCGGUGCACCA   716

1.0 Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA NA coding protein psRNATarget
NM_001176621.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|*||||||||||||||||*
targets:501   UGCACCUGACAGUCCGGUGCACCG   524

2.0 Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA NA coding protein psRNATarget
BT068871.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*||||||||||||||||||*
targets:693   CUCACCGGACAGUCCGGUGCACCA   716

1.0 Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds NA coding protein psRNATarget
BT068871.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|*||||||||||||||||*
targets:501   UGCACCUGACAGUCCGGUGCACCG   524

2.0 Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds NA coding protein psRNATarget
BT060603.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||*||||||||||||*
targets:1550   CGCACCGGACUGUCCGGUGCACCA   1573

2.0 Zea mays full-length cDNA clone ZM_BFb0021N16 mRNA, complete cds NA coding protein psRNATarget
LQ242243.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*||||||||||||||||||*
targets:153   UGCACCGGACAGUCCGGUGCACCA   176

1.0 Sequence 8238 from Patent EP2985353 NA coding protein psRNATarget
HI410113.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*||||||||||||||||||*
targets:153   UGCACCGGACAGUCCGGUGCACCA   176

1.0 Sequence 8238 from Patent EP2074227 NA coding protein psRNATarget
JB170574.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*||||||||||||||||||*
targets:153   UGCACCGGACAGUCCGGUGCACCA   176

1.0 Sequence 8238 from Patent EP2559767 NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  ||||*|||||||||||||||*||*
targets:806   ACCACCGGACAGUCCGGUGCCCCA   829

2.5 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||||||||||||||**
targets:683   CUCACCGGACAGUCCGGUGCACAC   706

2.5 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||||**
targets:489   CGCACCGGACAGUCCGGUGCACAC   512

2.5 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
NM_001175949.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||||**
targets:585   CGCACCGGACAGUCCGGUGCACAC   608

2.5 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
BT066811.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  ||||*|||||||||||||||*||*
targets:806   ACCACCGGACAGUCCGGUGCCCCA   829

2.5 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||||||||||||||**
targets:683   CUCACCGGACAGUCCGGUGCACAC   706

2.5 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||||**
targets:489   CGCACCGGACAGUCCGGUGCACAC   512

2.5 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||||**
targets:585   CGCACCGGACAGUCCGGUGCACAC   608

2.5 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
BT061124.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  ||||*|||||||||||||||*||*
targets:669   ACCACCGGACAGUCCGGUGCUCCA   692

2.5 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
BT061124.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||||||||||||||**
targets:547   CUCACCGGACAGUCCGGUGCACAC   570

2.5 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
BT061124.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||||**
targets:336   CGCACCGGACAGUCCGGUGCACAC   359

2.5 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
BT061124.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||*||*
targets:452   CACACCGGACAGUCCGGUGCCCCC   475

2.5 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  ||||*|||||||||||||||*||*
targets:669   ACCACCGGACAGUCCGGUGCUCCA   692

2.5 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||||||||||||||**
targets:547   CUCACCGGACAGUCCGGUGCACAC   570

2.5 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||||**
targets:336   CGCACCGGACAGUCCGGUGCACAC   359

2.5 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
NM_001165861.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||*||*
targets:452   CACACCGGACAGUCCGGUGCCCCC   475

2.5 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
EU950973.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*||||||||||||||||||*
targets:187   UGCACCGGACAGUCCGGUGCACCC   210

1.0 Zea mays clone 677173 mRNA sequence NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  ||||*|||||||||||||||*||*
targets:4717   ACCACCGGACAGUCCGGUGCCCCA   4740

2.5 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||||||||||||||**
targets:4595   CUCACCGGACAGUCCGGUGCACAC   4618

2.5 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||||**
targets:4383   CGCACCGGACAGUCCGGUGCACAC   4406

2.5 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
XM_020546123.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||*||*
targets:4499   CACACCGGACAGUCCGGUGCCCCC   4522

2.5 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
BT065201.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*||||||||||||||||||*
targets:590   UGCACCGGACAGUCCGGUGCACCA   613

1.0 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *|||*|||||||||||||||||**
targets:819   CCCACCGGACAGUCCGGUGCACAC   842

2.5 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT065201.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||||**
targets:728   CACACCGGACAGUCCGGUGCACAC   751

2.5 Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*||||||||||||||||||*
targets:142   UGCACCGGACAGUCCGGUGCACCA   165

1.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
BT061123.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||||||||||||||**
targets:359   CUCACCGGACAGUCCGGUGCACAC   382

2.5 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
BT086229.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||=||||||||*
targets:411   UGCACCGGACAGUCUGGUGCACCA   434

2.5 Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds NA coding protein psRNATarget
EZ065990.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||=||*
targets:4   CGCACCGGACAGUCCGGUGCGCCA   27

2.5 TSA: Zea mays contig01624, mRNA sequence NA coding protein psRNATarget
HI409410.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||=||*
targets:97   UGCACCGGACAGUCCGGUGCGCCA   120

2.5 Sequence 7535 from Patent EP2074227 NA coding protein psRNATarget
LQ241540.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||=||*
targets:97   UGCACCGGACAGUCCGGUGCGCCA   120

2.5 Sequence 7535 from Patent EP2985353 NA coding protein psRNATarget
JB169871.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||=||*
targets:97   UGCACCGGACAGUCCGGUGCGCCA   120

2.5 Sequence 7535 from Patent EP2559767 NA coding protein psRNATarget
EZ106959.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||=||*
targets:100   CACACCGGACAGUCCGGUGCGCCA   123

2.5 TSA: Zea mays contig42617, mRNA sequence NA coding protein psRNATarget
EZ108756.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||=||*
targets:150   CGCACCGGACAGUCCGGUGCGCCA   173

2.5 TSA: Zea mays contig44415, mRNA sequence NA coding protein psRNATarget
BT069074.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||=||*
targets:767   UGCACCGGACAGUCCGGUGCGCCA   790

2.5 Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds NA coding protein psRNATarget
BT083610.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||=||*
targets:479   CGCACCGGACAGUCCGGUGCGCCA   502

2.5 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT083610.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||=||*
targets:803   CACACCGGACAGUCCGGUGCGCCA   826

2.5 Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds NA coding protein psRNATarget
BT061709.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||=||*
targets:593   UGCACCGGACAGUCCGGUGCGCCA   616

2.5 Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds NA coding protein psRNATarget
NM_001174416.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||=||*
targets:593   UGCACCGGACAGUCCGGUGCGCCA   616

2.5 Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||||||||||||||**
targets:700   CUCACCGGACAGUCCGGUGCACAC   723

2.5 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||||**
targets:509   CGCACCGGACAGUCCGGUGCACAC   532

2.5 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
NM_001175687.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||*||*
targets:605   CGCACCGGACAGUCCGGUGCCCCC   628

2.5 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
BT065921.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||||||||||||||**
targets:700   CUCACCGGACAGUCCGGUGCACAC   723

2.5 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||||**
targets:509   CGCACCGGACAGUCCGGUGCACAC   532

2.5 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||*||*
targets:605   CGCACCGGACAGUCCGGUGCCCCC   628

2.5 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
EU940845.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||||||||||||||**
targets:1475   CUCACCGGACAGUCCGGUGCACAC   1498

2.5 Zea mays clone 1163633 mRNA sequence NA coding protein psRNATarget
EU940845.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||||**
targets:1385   CACACCGGACAGUCCGGUGCACAC   1408

2.5 Zea mays clone 1163633 mRNA sequence NA coding protein psRNATarget
EU940974.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||||||||||||||**
targets:2755   CUCACCGGACAGUCCGGUGCACAC   2778

2.5 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
EU940974.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||||**
targets:2544   CGCACCGGACAGUCCGGUGCACAC   2567

2.5 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
BT064593.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  =|||*=||||*||||||||||||*
targets:783   GCCACUGGACUGUCCGGUGCACCA   806

3.0 Zea mays full-length cDNA clone ZM_BFc0188B15 mRNA, complete cds NA coding protein psRNATarget
EZ092215.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  *=||*|||||*||||||||||||*
targets:28   UUCACCGGACUGUCCGGUGCACCA   51

2.0 TSA: Zea mays contig27864, mRNA sequence NA coding protein psRNATarget
BT063396.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  =|||*=||||*||||||||||||*
targets:2742   GCCACUGGACUGUCCGGUGCACCA   2765

3.0 Zea mays full-length cDNA clone ZM_BFc0059P01 mRNA, complete cds NA coding protein psRNATarget
HI409351.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||*||*
targets:35   UACACCGGACAGUCCGGUGCCCCC   58

2.5 Sequence 7476 from Patent EP2074227 NA coding protein psRNATarget
LQ241481.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||*||*
targets:35   UACACCGGACAGUCCGGUGCCCCC   58

2.5 Sequence 7476 from Patent EP2985353 NA coding protein psRNATarget
JB169812.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||||||||||||*||*
targets:35   UACACCGGACAGUCCGGUGCCCCC   58

2.5 Sequence 7476 from Patent EP2559767 NA coding protein psRNATarget
EZ071967.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||*||||||||||||*
targets:54   UGCACCGGACUGUCCGGUGCACCA   77

2.0 TSA: Zea mays contig07604, mRNA sequence NA coding protein psRNATarget
HI410048.1
ncRNA:21   UAGCCUGUCAGGCCACGUGGA   1
  |*|||||||||||||||||**
targets:1   ACCGGACAGUCCGGUGCACAC   21

2.5 Sequence 8173 from Patent EP2074227 NA coding protein psRNATarget
LQ242178.1
ncRNA:21   UAGCCUGUCAGGCCACGUGGA   1
  |*|||||||||||||||||**
targets:1   ACCGGACAGUCCGGUGCACAC   21

2.5 Sequence 8173 from Patent EP2985353 NA coding protein psRNATarget
JB170509.1
ncRNA:21   UAGCCUGUCAGGCCACGUGGA   1
  |*|||||||||||||||||**
targets:1   ACCGGACAGUCCGGUGCACAC   21

2.5 Sequence 8173 from Patent EP2559767 NA coding protein psRNATarget
BT042818.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||*||||||||||||*
targets:836   CGCACCGGACUGUCCGGUGCACCA   859

2.0 Zea mays full-length cDNA clone ZM_BFc0047A15 mRNA, complete cds NA coding protein psRNATarget
EU970212.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||*||||||||||||*
targets:405   CGCACCGGACUGUCCGGUGCACCA   428

2.0 Zea mays clone 342257 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
NM_001152406.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||*||||||||||||*
targets:1565   UGCACCGGACUGUCCGGUGCACCA   1588

2.0 Zea mays uncharacterized LOC100279393 (LOC100279393), mRNA NA coding protein psRNATarget
BT054171.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||*||||||||||||*
targets:1565   UGCACCGGACUGUCCGGUGCACCA   1588

2.0 Zea mays full-length cDNA clone ZM_BFb0148C07 mRNA, complete cds NA coding protein psRNATarget
EU943181.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*|||||*||||||||||||*
targets:936   UGCACCGGACUGUCCGGUGCACCC   959

2.0 Zea mays clone 1580698 mRNA sequence NA coding protein psRNATarget
EU959991.1
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*||*||*||||||||||||*
targets:335   CGCACCGCACUGUCCGGUGCACCA   358

3.0 Zea mays clone 221041 hypothetical protein mRNA, complete cds NA coding protein psRNATarget
XM_008663618.2
ncRNA:24   UGGUAGCCUGUCAGGCCACGUGGA   1
  **||*||*||*||||||||||||*
targets:421   CGCACCGCACUGUCCGGUGCACCA   444

3.0 PREDICTED: Zea mays uncharacterized LOC103640564 (LOC103640564), mRNA NA coding protein psRNATarget
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