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BaseInfo

ncRNA ID	novel_zma_miR938
Species	Zea mays
Class	miRNA
Genome position	Chr3:178123619-178123700 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089712;SRR2089714;SRR2089715;SRR2287031;SRR2287159;SRR2287160;SRR2287161;SRR2287164;SRR2287165;SRR5451004;SRR5451005;SRR5451006;SRR2089701;SRR2089702;SRR2089703;SRR2089704;SRR2089707;SRR2089708
Length	21
Mature sequence(if miRNA)	1 - GGAGGGGAUUGGAGAGGCUAA - 21
Stem-loop(if miRNA)	--                         C  CC       AA   GGAGGGGAUUGGAGAGGCUAAAAUC UC  CUUAUUC  U   ||||||||||||||||||||||||| ||  |||||||   CUUCUCUUAACCUCUCCGAUUUUAG AG  GAAUAAG  U GG                         A  AA       CU
Stem-loop sequence	GGAGGGGAUUGGAGAGGCUAAAAUCCUCCCCUUAUUCAAUUUCGAAUAAGAAGAAGAUUUUAGCCUCUCCAAUUCUCUUCGG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT017648.1	ncRNA:21   AAU-CGGAGAGGUUAGGGGAGG   1   |||-|||||||||||||||||| targets:165   UUAAGCCUCUCCAAUCCCCUCC   186 Target Full Sequence	2.0	Zea mays clone EL01N0439D04.c mRNA sequence	NA	coding protein	psRNATarget
AY104284.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   |||||||||||=||||||||* targets:1003   UUAGCCUCUCCGAUCCCCUCA   1023 Target Full Sequence	2.5	Zea mays PCO103339 mRNA sequence	NA	coding protein	psRNATarget
XM_020539411.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   ||||||*|||||||||||||| targets:3499   UUAGCCCCUCCAAUCCCCUCC   3519 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_020539397.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   ||||||*|||||||||||||| targets:3534   UUAGCCCCUCCAAUCCCCUCC   3554 Target Full Sequence	1.0	PREDICTED: Zea mays Protein kinase superfamily protein (LOC100502407), transcript variant X3, mRNA	NA	coding protein	psRNATarget
HI403389.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   ||||||*|||||||=|||||| targets:73   UUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	2.5	Sequence 1514 from Patent EP2074227	NA	coding protein	psRNATarget
JB163850.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   ||||||*|||||||=|||||| targets:73   UUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	2.5	Sequence 1514 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235519.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   ||||||*|||||||=|||||| targets:73   UUAGCCCCUCCAAUUCCCUCC   93 Target Full Sequence	2.5	Sequence 1514 from Patent EP2985353	NA	coding protein	psRNATarget
HI405820.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   ||||||*|||=|||||||||| targets:201   UUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	2.5	Sequence 3945 from Patent EP2074227	NA	coding protein	psRNATarget
JB166281.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   ||||||*|||=|||||||||| targets:201   UUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	2.5	Sequence 3945 from Patent EP2559767	NA	coding protein	psRNATarget
LQ237950.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   ||||||*|||=|||||||||| targets:201   UUAGCCCCUCUAAUCCCCUCC   221 Target Full Sequence	2.5	Sequence 3945 from Patent EP2985353	NA	coding protein	psRNATarget
AY108273.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   ||||||*|||||||||||||= targets:331   UUAGCCCCUCCAAUCCCCUCU   351 Target Full Sequence	2.0	Zea mays PCO108913 mRNA sequence	NA	coding protein	psRNATarget
XM_008654495.2	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   ||||||*||=||||||||||| targets:1112   UUAGCCCCUUCAAUCCCCUCC   1132 Target Full Sequence	2.5	PREDICTED: Zea mays probable GMP synthase [glutamine-hydrolyzing] (LOC103632764), mRNA	NA	coding protein	psRNATarget
BT018614.1	ncRNA:21   AAUCGGAGAGGU-UAGGGGAGG   1   |*||||||||||-||||||||| targets:19   UAAGCCUCUCCACAUCCCCUCC   40 Target Full Sequence	3.0	Zea mays clone EL01N0501C09.d mRNA sequence	NA	coding protein	psRNATarget
EU956704.1	ncRNA:21   AAUCGGAGAGGU-UAGGGGAGG   1   |*||||||||||-||||||||| targets:731   UAAGCCUCUCCACAUCCCCUCC   752 Target Full Sequence	3.0	Zea mays clone 1571140 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001149610.1	ncRNA:21   AAUCGGAGAGGU-UAGGGGAGG   1   |*||||||||||-||||||||| targets:679   UAAGCCUCUCCACAUCCCCUCC   700 Target Full Sequence	3.0	Zea mays hypothetical protein (LOC100275555), mRNA	NA	coding protein	psRNATarget
BT066794.1	ncRNA:21   AAUCGGAGAGGU-UAGGGGAGG   1   |*||||||||||-||||||||| targets:679   UAAGCCUCUCCACAUCCCCUCC   700 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0067K16 mRNA, complete cds	NA	coding protein	psRNATarget
BT065170.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   |||*||*|||||||||||||| targets:683   UUAUCCCCUCCAAUCCCCUCC   703 Target Full Sequence	2.0	Zea mays full-length cDNA clone ZM_BFb0017F16 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008667867.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   |||*||*|||||||||||||| targets:1030   UUAACCCCUCCAAUCCCCUCC   1050 Target Full Sequence	2.0	PREDICTED: Zea mays 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase (LOC103644703), mRNA	NA	coding protein	psRNATarget
XM_008670893.2	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   |||*||*|||||||||||||| targets:1563   UUAUCCCCUCCAAUCCCCUCC   1583 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008670890.2	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   |||*||*|||||||||||||| targets:1583   UUAUCCCCUCCAAUCCCCUCC   1603 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008670892.2	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   |||*||*|||||||||||||| targets:1607   UUAUCCCCUCCAAUCCCCUCC   1627 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008670891.2	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   |||*||*|||||||||||||| targets:1640   UUAUCCCCUCCAAUCCCCUCC   1660 Target Full Sequence	2.0	PREDICTED: Zea mays uncharacterized LOC100382722 (LOC100382722), transcript variant X2, mRNA	NA	coding protein	psRNATarget
EZ083462.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   **|*|||||||||||||=||| targets:20   AAAUCCUCUCCAAUCCCUUCC   40 Target Full Sequence	2.5	TSA: Zea mays contig19106, mRNA sequence	NA	coding protein	psRNATarget
AY111588.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   **|*|||||||||||||=||| targets:302   AAAUCCUCUCCAAUCCCUUCC   322 Target Full Sequence	2.5	Zea mays CL28155_-2 mRNA sequence	NA	coding protein	psRNATarget
EU947467.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   **|*|||||=||||||||||| targets:1297   CAAACCUCUUCAAUCCCCUCC   1317 Target Full Sequence	2.5	Zea mays clone 343885 mRNA sequence	NA	coding protein	psRNATarget
NM_001323405.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   **|*|||||=||||||||||| targets:2000   CAAACCUCUUCAAUCCCCUCC   2020 Target Full Sequence	2.5	Zea mays SKP1-interacting partner 15-like (LOC103648491), transcript variant 1, mRNA	NA	coding protein	psRNATarget
EZ074100.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   *|||||*|||||||||*|||| targets:217   CUAGCCCCUCCAAUCCACUCC   237 Target Full Sequence	2.5	TSA: Zea mays contig09737, mRNA sequence	NA	coding protein	psRNATarget
EU941453.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   *|||||*|*|||||||||||| targets:58   CUAGCCCCCCCAAUCCCCUCC   78 Target Full Sequence	2.5	Zea mays clone 1453301 mRNA sequence	NA	coding protein	psRNATarget
EU945351.1	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   *|||||*||||||*||||||| targets:414   CUAGCCCCUCCAACCCCCUCC   434 Target Full Sequence	2.5	Zea mays clone 260481 mRNA sequence	NA	coding protein	psRNATarget
XM_008672161.2	ncRNA:21   AAUCGGAGAGGUUAGGGGAGG   1   *|||||*||||||*||||||| targets:1266   CUAGCCCCUCCAACCCCCUCC   1286 Target Full Sequence	2.5	PREDICTED: Zea mays TVP38/TMEM64 family membrane protein YtxB (LOC103647660), mRNA	NA	coding protein	psRNATarget