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BaseInfo

ncRNA ID	novel_zma_miR937
Species	Zea mays
Class	miRNA
Genome position	Chr3:15640275-15640468 [+]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	171 - AUGCUCUGGAUGGUUUGAUUGCAC - 194
Stem-loop(if miRNA)	--                                      ACCU    G     --U   C     CCUAAAUCUAAU   GAAUGUUAUUUUGUAUUUAAACCC   GCAAUCAAACCAUCCAGAGCAUCCAAUUUAUAUCCAUU    GUUU CAUAU   AGU GUUGC            GGU                        U   ||||||||||||||||||||||||||||||||||||||    |||| |||||   ||| |||||            |||   CGUUAGUUUGGUAGGUCUCGUAGGUUAAAUAUAGGUAG    CAAA GUAUA   UUA CAAUG            CAU                        U CA                                      ---C    -     CCU   C     ----------UA   UUUAUCUGUGAUCCAAAGUCCACC
Stem-loop sequence	GCAAUCAAACCAUCCAGAGCAUCCAAUUUAUAUCCAUUACCUGUUUGCAUAUUAGUCGUUGCCCUAAAUCUAAUGGUGAAUGUUAUUUUGUAUUUAAACCCUUCCACCUGAAACCUAGUGUCUAUUUUACAUGUAACCAUUUCCAUAUGAAACCGAUGGAUAUAAAUUGGAUGCUCUGGAUGGUUUGAUUGCAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235421.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   |||||||||||||||||||||||| targets:35   GUGCAAUCAAACCAUCCAGAGCAU   58 Target Full Sequence	0.0	Sequence 1416 from Patent EP2985353	NA	coding protein	psRNATarget
JB163752.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   |||||||||||||||||||||||| targets:35   GUGCAAUCAAACCAUCCAGAGCAU   58 Target Full Sequence	0.0	Sequence 1416 from Patent EP2559767	NA	coding protein	psRNATarget
HI403291.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   |||||||||||||||||||||||| targets:35   GUGCAAUCAAACCAUCCAGAGCAU   58 Target Full Sequence	0.0	Sequence 1416 from Patent EP2074227	NA	coding protein	psRNATarget
EU971778.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||||||||=||||||||||| targets:627   GUGCAAUCAAACUAUCCAGAGCAU   650 Target Full Sequence	1.5	Zea mays clone 370490 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
EU954880.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||||||||=||||||||||| targets:641   GUGCAAUCAAACUAUCCAGAGCAU   664 Target Full Sequence	1.5	Zea mays clone 1489976 ubiquitin-fusion protein mRNA, complete cds	NA	coding protein	psRNATarget
XM_008661850.2	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||||||||=||||||||||| targets:642   GUGCAAUCAAACUAUCCAGAGCAU   665 Target Full Sequence	1.5	PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008661851.2	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||||||||=||||||||||| targets:655   GUGCAAUCAAACUAUCCAGAGCAU   678 Target Full Sequence	1.5	PREDICTED: Zea mays membrane-anchored ubiquitin-fold protein 1 (LOC103639057), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020551352.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||||||||=||||||||||| targets:44   GUGCAAUCAAACUAUCCAGAGCAU   67 Target Full Sequence	1.5	PREDICTED: Zea mays putative glutathione S-transferase family protein (LOC100272773), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676293.2	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||||||||=||||||||||| targets:1533   GUGCAAUCAAACUAUCCAGAGCAU   1556 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X7, mRNA	NA	coding protein	psRNATarget
XM_008676292.2	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||||||||=||||||||||| targets:1705   GUGCAAUCAAACUAUCCAGAGCAU   1728 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008676294.2	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||||||||=||||||||||| targets:1878   GUGCAAUCAAACUAUCCAGAGCAU   1901 Target Full Sequence	1.5	PREDICTED: Zea mays kinesin-like protein KIN-4C (LOC103650724), transcript variant X8, mRNA	NA	coding protein	psRNATarget
HI403296.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||*||||||||||||||||| targets:34   GUGCAACCAAACCAUCCAGAGCAU   57 Target Full Sequence	1.0	Sequence 1421 from Patent EP2074227	NA	coding protein	psRNATarget
JB163757.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||*||||||||||||||||| targets:34   GUGCAACCAAACCAUCCAGAGCAU   57 Target Full Sequence	1.0	Sequence 1421 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235426.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||*||||||||||||||||| targets:34   GUGCAACCAAACCAUCCAGAGCAU   57 Target Full Sequence	1.0	Sequence 1421 from Patent EP2985353	NA	coding protein	psRNATarget
HI403489.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||*||||||||||||||||| targets:35   GUGCAACCAAACCAUCCAGAGCAU   58 Target Full Sequence	1.0	Sequence 1614 from Patent EP2074227	NA	coding protein	psRNATarget
JB163950.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||*||||||||||||||||| targets:35   GUGCAACCAAACCAUCCAGAGCAU   58 Target Full Sequence	1.0	Sequence 1614 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235619.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||*||||||||||||||||| targets:35   GUGCAACCAAACCAUCCAGAGCAU   58 Target Full Sequence	1.0	Sequence 1614 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008676189.2	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||*|||||||||=||||||||||| targets:848   GUACAAUCAAACUAUCCAGAGCAU   871 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized LOC103650617 (LOC103650617), mRNA	NA	coding protein	psRNATarget
XM_020538318.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||*|||||||||=||||||||||| targets:35   GUACAAUCAAACUAUCCAGAGCAU   58 Target Full Sequence	1.5	PREDICTED: Zea mays zinc finger CCCH domain-containing protein 45 (LOC103626282), mRNA	NA	coding protein	psRNATarget
LQ235445.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||*||||||||*|||||||| targets:35   GUGCAACCAAACCAUACAGAGCAU   58 Target Full Sequence	2.5	Sequence 1440 from Patent EP2985353	NA	coding protein	psRNATarget
JB163776.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||*||||||||*|||||||| targets:35   GUGCAACCAAACCAUACAGAGCAU   58 Target Full Sequence	2.5	Sequence 1440 from Patent EP2559767	NA	coding protein	psRNATarget
HI403315.1	ncRNA:24   CACGUUAGUUUGGUAGGUCUCGUA   1   ||||||*||||||||*|||||||| targets:35   GUGCAACCAAACCAUACAGAGCAU   58 Target Full Sequence	2.5	Sequence 1440 from Patent EP2074227	NA	coding protein	psRNATarget
BT041273.1	ncRNA:24   CACGUUAGUU-UGGUAGGUCUCGUA   1   |*|*||*|||-|||||||||||||| targets:155   GAGGAACCAAUACCAUCCAGAGCAU   179 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFb0109F17 mRNA, complete cds	NA	coding protein	psRNATarget
AY108651.1	ncRNA:24   CACGUUAGUU-UGGUAGGUCUCGUA   1   |*|*||*|||-|||||||||||||| targets:150   GAGGAACCAAUACCAUCCAGAGCAU   174 Target Full Sequence	3.0	Zea mays PCO100872 mRNA sequence	NA	coding protein	psRNATarget
XM_008667184.2	ncRNA:24   CACGUUAGUU-UGGUAGGUCUCGUA   1   |*|*||*|||-|||||||||||||| targets:1801   GAGGAACCAAUACCAUCCAGAGCAU   1825 Target Full Sequence	3.0	PREDICTED: Zea mays ATP-dependent RNA helicase SUV3, mitochondrial (LOC100273495), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008667183.2	ncRNA:24   CACGUUAGUU-UGGUAGGUCUCGUA   1   |*|*||*|||-|||||||||||||| targets:2018   GAGGAACCAAUACCAUCCAGAGCAU   2042 Target Full Sequence	3.0	PREDICTED: Zea mays ATP-dependent RNA helicase SUV3, mitochondrial (LOC100273495), transcript variant X1, mRNA	NA	coding protein	psRNATarget