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BaseInfo

ncRNA ID novel_zma_miR934
Species Zea mays
Class miRNA
Genome position Chr3:170942742-170942879 [+]
Reference genome RefGen_v4
Source SRR2089710;SRR2089703
Length 20
Mature sequence(if miRNA) 1 - AUUAUGGUGGAAGGGUAGGA - 20
Stem-loop(if miRNA) --      G           GAU         G      A       A     G            CCC
  AUUAUG UGGAAGGGUAG   GGUAAAUAU ACUUUG GAUUACA AUAAG UGAAAUAAGCUA   A
  |||||| |||||||||||   ||||||||| |||||| ||||||| ||||| ||||||||||||
  UAAUAC ACCUUCCUAUC   CCAUUUAUA UGAAAC CUGAUGU UAUUU ACUUUAUUCGAU   A
CC      A           AUC         G      C       C     G            UGU
Stem-loop sequence AUUAUGGUGGAAGGGUAGGAUGGUAAAUAUGACUUUGAGAUUACAAAUAAGGUGAAAUAAGCUACCCAAUGUUAGCUUAUUUCAGUUUAUCUGUAGUCCCAAAGUGAUAUUUACCCUACUAUCCUUCCAACAUAAUCC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT087535.1
ncRNA:20   AGGAUGGGAAGGUGGUAUUA   1
  ||||==||||||||||||||
targets:191   UCCUGUCCUUCCACCAUAAU   210

2.0 Zea mays full-length cDNA clone ZM_BFb0104B17 mRNA, complete cds NA coding protein psRNATarget
NM_001139196.1
ncRNA:20   AGGAUGGGAAGGUGGUAUUA   1
  |=||||||||*|||||||||
targets:1068   UUCUACCCUUACACCAUAAU   1087

2.5 Zea mays OSJNBa0029H02.27-like protein (pco137821), mRNA NA coding protein psRNATarget
BT036602.1
ncRNA:20   AGGAUGGGAAGGUGGUAUUA   1
  |=||||||||*|||||||||
targets:1068   UUCUACCCUUACACCAUAAU   1087

2.5 Zea mays full-length cDNA clone ZM_BFb0125H01 mRNA, complete cds NA coding protein psRNATarget