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BaseInfo

ncRNA ID ath-miRf10017-npr
Species Arabidopsis thaliana
Class miRNA
Genome position NA
Reference genome NA
Source PNRD
Length 24
Mature sequence(if miRNA) NA - UACUCGACCAGGGGGUCGAGUAGU - NA
Stem-loop(if miRNA) U      ---        AGGG         --    G  AGAGUGA  G    AGU
 GAUGAU   ACUUGACC    GGUCGAGUA  ACUU GU       AU GUCG   G
 ||||||   ||||||||    |||||||||  |||| ||       || ||||
 CUACUG   UGAGCUGG    CCAGCUCAU  UGAA CG       UG UAGU   A
G      UGA        GGGA         AG    G  ----GUG  G    GGU
Stem-loop sequence UGAUGAUACUUGACCAGGGGGUCGAGUAACUUGGUAGAGUGAAUGGUCGAGUGAUGGUGAUGGUGUGGCGAAGUGAUACUCGACCAGGGGGUCGAGUAGUGUCAUCG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT015478.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  *|||||||||||||||||||||||
targets:180   UCUACUCGACCCCCUGGUCGAGUA   203

0.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  =|*|||||||||||||||||||||
targets:229   GCCACUCGACCCCCUGGUCGAGUA   252

0.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  *|||||||||||||||||||||||
targets:180   UCUACUCGACCCCCUGGUCGAGUA   203

0.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  =|*|||||||||||||||||||||
targets:229   GCCACUCGACCCCCUGGUCGAGUA   252

0.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
BT025674.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  *=||||||||||||||||||||||
targets:307   CUUACUCGACCCCCUGGUCGAGUA   330

0.0 Arabidopsis thaliana NA coding protein psRNATarget
DQ069808.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  ||*|||||||||||||||||||||
targets:89   ACCACUCGACCCCCUGGUCGAGUA   112

0.0 Arabidopsis thaliana At2g10880 mRNA, partial sequence NA coding protein psRNATarget
EF183192.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  ||*|||||||||||||||||||||
targets:123   ACCACUCGACCCCCUGGUCGAGUA   146

0.0 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  ||*|||||||||||||||||||||
targets:498   ACCACUCGACCCCCUGGUCGAGUA   521

0.0 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  ||*|||||||||||||||||||||
targets:498   ACCACUCGACCCCCUGGUCGAGUA   521

0.0 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
EF183042.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  |=*|||||||||||||||||||||
targets:1570   AUCACUCGACCCCCUGGUCGAGUA   1593

0.0 Arabidopsis thaliana clone asmbl_11759 unknown mRNA sequence NA coding protein psRNATarget
BT015478.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  ==|||||*||||||||||||||||
targets:300   GUUACUCAACCCCCUGGUCGAGUA   323

1.0 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  ==|||||*||||||||||||||||
targets:300   GUUACUCAACCCCCUGGUCGAGUA   323

1.0 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
AY231407.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  |=|||*||||||||||||||||||
targets:582   AUUACYCGACCCCCUGGUCGAGUA   605

1.0 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
AY231407.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  ||*||||||||||*||||||||||
targets:488   ACCACUCGACCCCGUGGUCGAGUA   511

1.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
AY231407.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  ||*||||||||||*||||||||||
targets:534   ACCACUCGACCCCAUGGUCGAGUA   557

1.5 Arabidopsis thaliana hypothetical protein (At2g11090/F15K19.16) mRNA, complete cds NA coding protein psRNATarget
BT025674.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  *|||||||||||||*|||||||||
targets:186   UCUACUCGACCCCCAGGUCGAGUA   209

1.5 Arabidopsis thaliana NA coding protein psRNATarget
NM_103391.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  ||*|||||||||||*|||||||||
targets:1103   ACCACUCGACCCCCAGGUCGAGUA   1126

1.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
BT015478.1
ncRNA:24   UG--AUGAGCUGGGGGACCAGCUCAU   1
  ||--||||||||||||*||||||||=
targets:133   ACCAUACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636 mRNA sequence NA coding protein psRNATarget
BT014714.1
ncRNA:24   UG--AUGAGCUGGGGGACCAGCUCAU   1
  ||--||||||||||||*||||||||=
targets:133   ACCAUACUCGACCCCCAGGUCGAGUG   158

2.5 Arabidopsis thaliana At4g05636.1 mRNA sequence NA coding protein psRNATarget
EF183192.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  ||*|*||*|||||*||||||||||
targets:168   ACCAGUCAACCCCGUGGUCGAGUA   191

2.5 Arabidopsis thaliana clone asmbl_2299 unknown mRNA sequence NA coding protein psRNATarget
EF183193.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  ||*|*||*|||||*||||||||||
targets:543   ACCAGUCAACCCCGUGGUCGAGUA   566

2.5 Arabidopsis thaliana clone asmbl_2300 unknown mRNA sequence NA coding protein psRNATarget
EF183191.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  ||*|*||*|||||*||||||||||
targets:543   ACCAGUCAACCCCGUGGUCGAGUA   566

2.5 Arabidopsis thaliana clone asmbl_2298 unknown mRNA sequence NA coding protein psRNATarget
NM_103391.1
ncRNA:24   UGAUGAGCUGGGGGACCAGCUCAU   1
  ||*||||||||||*|||||||||=
targets:1208   ACCACUCGACCCCGUGGUCGAGUG   1231

2.5 Arabidopsis thaliana DNAse I-like superfamily protein partial mRNA DNAse I-like superfamily protein(AT1G40390) coding protein psRNATarget
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