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BaseInfo

ncRNA ID	novel_zma_miR924
Species	Zea mays
Class	miRNA
Genome position	Chr3:141455126-141455196 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089707
Length	24
Mature sequence(if miRNA)	1 - CAUAUGUGUUGAGGUGGAUUGGGG - 24
Stem-loop(if miRNA)	--   A                         A  AG   CAU UGUGUUGAGGUGGAUUGGGGUGUAA CU  U   ||| ||||||||||||||||||||||||| ||   GUA ACAUAAUUCUACCUAACCUCACAUU GA  U AA   A                         -  AU
Stem-loop sequence	CAUAUGUGUUGAGGUGGAUUGGGGUGUAAACUAGUUUAAGUUACACUCCAAUCCAUCUUAAUACAAAUGAA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235392.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   =||||||||||||||||||||||| targets:65   UCCCAAUCCACCUCAACACAUAUG   88 Target Full Sequence	0.0	Sequence 1387 from Patent EP2985353	NA	coding protein	psRNATarget
HI403263.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   =||||||||||||||||||||||| targets:65   UCCCAAUCCACCUCAACACAUAUG   88 Target Full Sequence	0.0	Sequence 1388 from Patent EP2074227	NA	coding protein	psRNATarget
HI403262.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   =||||||||||||||||||||||| targets:65   UCCCAAUCCACCUCAACACAUAUG   88 Target Full Sequence	0.0	Sequence 1387 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235393.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   =||||||||||||||||||||||| targets:65   UCCCAAUCCACCUCAACACAUAUG   88 Target Full Sequence	0.0	Sequence 1388 from Patent EP2985353	NA	coding protein	psRNATarget
JB163724.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   =||||||||||||||||||||||| targets:65   UCCCAAUCCACCUCAACACAUAUG   88 Target Full Sequence	0.0	Sequence 1388 from Patent EP2559767	NA	coding protein	psRNATarget
JB163723.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   =||||||||||||||||||||||| targets:65   UCCCAAUCCACCUCAACACAUAUG   88 Target Full Sequence	0.0	Sequence 1387 from Patent EP2559767	NA	coding protein	psRNATarget
AY110392.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   ||=||||||||||||||||||=|| targets:155   CCUCAAUCCACCUCAACACAUGUG   178 Target Full Sequence	1.5	Zea mays CL7038_2 mRNA sequence	NA	coding protein	psRNATarget
JB163690.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   ||=|||||||=|||||=||||||| targets:65   CCUCAAUCCAUCUCAAUACAUAUG   88 Target Full Sequence	2.5	Sequence 1354 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235359.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   ||=|||||||=|||||=||||||| targets:65   CCUCAAUCCAUCUCAAUACAUAUG   88 Target Full Sequence	2.5	Sequence 1354 from Patent EP2985353	NA	coding protein	psRNATarget
HI403229.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   ||=|||||||=|||||=||||||| targets:65   CCUCAAUCCAUCUCAAUACAUAUG   88 Target Full Sequence	2.5	Sequence 1354 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001291617.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   ||=|||||||=||||||||||=|| targets:814   CCUCAAUCCAUCUCAACACAUGUG   837 Target Full Sequence	2.5	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
BT068211.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   ||=|||||||=||||||||||=|| targets:814   CCUCAAUCCAUCUCAACACAUGUG   837 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
EU963259.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   ||=|||||||=||||||||||=|| targets:1057   CCUCAAUCCAUCUCAACACAUGUG   1080 Target Full Sequence	2.5	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
JB163659.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   *|=||||||||||||||||||=|| targets:65   ACUCAAUCCACCUCAACACAUGUG   88 Target Full Sequence	1.5	Sequence 1323 from Patent EP2559767	NA	coding protein	psRNATarget
HI403198.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   *|=||||||||||||||||||=|| targets:65   ACUCAAUCCACCUCAACACAUGUG   88 Target Full Sequence	1.5	Sequence 1323 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235328.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   *|=||||||||||||||||||=|| targets:65   ACUCAAUCCACCUCAACACAUGUG   88 Target Full Sequence	1.5	Sequence 1323 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008672302.2	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   *|*||||||||||||||||||||| targets:2498   ACACAAUCCACCUCAACACAUAUG   2521 Target Full Sequence	0.0	PREDICTED: Zea mays protein SHORT-ROOT 1 (LOC103647790), mRNA	NA	coding protein	psRNATarget
LQ235585.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |*==|||||||||||||||||=|| targets:63   CAUUAAUCCACCUCAACACAUGUG   86 Target Full Sequence	1.5	Sequence 1580 from Patent EP2985353	NA	coding protein	psRNATarget
HI403455.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |*==|||||||||||||||||=|| targets:63   CAUUAAUCCACCUCAACACAUGUG   86 Target Full Sequence	1.5	Sequence 1580 from Patent EP2074227	NA	coding protein	psRNATarget
JB163916.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |*==|||||||||||||||||=|| targets:63   CAUUAAUCCACCUCAACACAUGUG   86 Target Full Sequence	1.5	Sequence 1580 from Patent EP2559767	NA	coding protein	psRNATarget
HI403308.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   *|||*|||||=||||||||||=|| targets:100   ACCCUAUCCAUCUCAACACAUGUG   123 Target Full Sequence	2.5	Sequence 1433 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235438.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   *|||*|||||=||||||||||=|| targets:100   ACCCUAUCCAUCUCAACACAUGUG   123 Target Full Sequence	2.5	Sequence 1433 from Patent EP2985353	NA	coding protein	psRNATarget
JB163769.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   *|||*|||||=||||||||||=|| targets:100   ACCCUAUCCAUCUCAACACAUGUG   123 Target Full Sequence	2.5	Sequence 1433 from Patent EP2559767	NA	coding protein	psRNATarget
JB163947.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |=|*|||||||||||||||||*|| targets:61   CUCAAAUCCACCUCAACACAUCUG   84 Target Full Sequence	1.5	Sequence 1611 from Patent EP2559767	NA	coding protein	psRNATarget
HI403486.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |=|*|||||||||||||||||*|| targets:61   CUCAAAUCCACCUCAACACAUCUG   84 Target Full Sequence	1.5	Sequence 1611 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235616.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |=|*|||||||||||||||||*|| targets:61   CUCAAAUCCACCUCAACACAUCUG   84 Target Full Sequence	1.5	Sequence 1611 from Patent EP2985353	NA	coding protein	psRNATarget
HI403348.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |=*=|||=|||||||||||||=|| targets:65   CUAUAAUUCACCUCAACACAUGUG   88 Target Full Sequence	2.5	Sequence 1473 from Patent EP2074227	NA	coding protein	psRNATarget
JB163809.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |=*=|||=|||||||||||||=|| targets:65   CUAUAAUUCACCUCAACACAUGUG   88 Target Full Sequence	2.5	Sequence 1473 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235478.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |=*=|||=|||||||||||||=|| targets:65   CUAUAAUUCACCUCAACACAUGUG   88 Target Full Sequence	2.5	Sequence 1473 from Patent EP2985353	NA	coding protein	psRNATarget
BT053958.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |*|=||||||*||||||||||=|| targets:1450   CACUAAUCCAACUCAACACAUGUG   1473 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0073M17 mRNA, complete cds	NA	coding protein	psRNATarget
BT066939.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |*|=||||||*||||||||||=|| targets:1524   CACUAAUCCAACUCAACACAUGUG   1547 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0114E07 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001153225.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |*|=||||||*||||||||||=|| targets:1656   CACUAAUCCAACUCAACACAUGUG   1679 Target Full Sequence	2.5	Zea mays choline/ethanolamine kinase (LOC100280298), mRNA	NA	coding protein	psRNATarget
BT055962.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |*|=||||||*||||||||||=|| targets:1656   CACUAAUCCAACUCAACACAUGUG   1679 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0070E08 mRNA, complete cds	NA	coding protein	psRNATarget
EU962737.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |*|=||||||*||||||||||=|| targets:1677   CACUAAUCCAACUCAACACAUGUG   1700 Target Full Sequence	2.5	Zea mays clone 245096 mRNA sequence	NA	coding protein	psRNATarget
XM_020547679.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |*|=||||||*||||||||||=|| targets:1698   CACUAAUCCAACUCAACACAUGUG   1721 Target Full Sequence	2.5	PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547680.1	ncRNA:24   GGGGUUAGGUGGAGUUGUGUAUAC   1   |*|=||||||*||||||||||=|| targets:1711   CACUAAUCCAACUCAACACAUGUG   1734 Target Full Sequence	2.5	PREDICTED: Zea mays choline/ethanolamine kinase (LOC100280298), transcript variant X2, mRNA	NA	coding protein	psRNATarget