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BaseInfo

ncRNA ID	novel_zma_miR923
Species	Zea mays
Class	miRNA
Genome position	Chr3:139981346-139981443 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089711;SRR2287162;SRR2287163;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - GAUUGAAGUGGAUUGAGGUGGUAU - 24
Stem-loop(if miRNA)	--                    -GUAUA   U U       U UA U  GA   GAUUGAAGUGGAUUGAGGUG      AGG G AUUGAAG G  A AU  A   ||||||||||||||||||||      ||| | ||||||| |  | ||   CUAACUUCACCUAACUUCAC      UCC C UAACUUU C  U UA  C CC                    AUAAAA   - -       - CC U  AU
Stem-loop sequence	GAUUGAAGUGGAUUGAGGUGGUAUAAGGUGUAUUGAAGUGUAAUAUGAACUAAUUUCCCUUUCAAUCCCUAAAAUACACUUCAAUCCACUUCAAUCCC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ238263.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||||||||||||||||*||||| targets:84   AUACCACCUCAAUCCACUCCAAUC   107 Target Full Sequence	1.5	Sequence 4258 from Patent EP2985353	NA	coding protein	psRNATarget
HI406133.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||||||||||||||||*||||| targets:84   AUACCACCUCAAUCCACUCCAAUC   107 Target Full Sequence	1.5	Sequence 4258 from Patent EP2074227	NA	coding protein	psRNATarget
JB166594.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||||||||||||||||*||||| targets:84   AUACCACCUCAAUCCACUCCAAUC   107 Target Full Sequence	1.5	Sequence 4258 from Patent EP2559767	NA	coding protein	psRNATarget
EU943240.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||||||||||||||||*||||| targets:571   AUACCACCUCAAUCCACUCCAAUC   594 Target Full Sequence	1.5	Zea mays clone 1589496 mRNA sequence	NA	coding protein	psRNATarget
EU965489.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||||||||||||||||*||||| targets:1109   AUACCACCUCAAUCCACUCCAAUC   1132 Target Full Sequence	1.5	Zea mays clone 286392 mRNA sequence	NA	coding protein	psRNATarget
XM_008667020.2	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||||||||||||||||*||||| targets:2078   AUACCACCUCAAUCCACUCCAAUC   2101 Target Full Sequence	1.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103643852), mRNA	NA	coding protein	psRNATarget
XM_020548088.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-||||||||||||||||||| targets:5049   AUAC-ACCUCAAUCCACUUCAAUC   5071 Target Full Sequence	0.0	PREDICTED: Zea mays probable phosphoribosylformylglycinamidine synthase, chloroplastic/mitochondrial (LOC103648345), mRNA	NA	coding protein	psRNATarget
EU960447.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||||||||||||||||*||||* targets:1213   AUACCACCUCAAUCCACUCCAAUA   1236 Target Full Sequence	2.5	Zea mays clone 224969 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001150023.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||||||||||||||||*||||* targets:1213   AUACCACCUCAAUCCACUCCAAUA   1236 Target Full Sequence	2.5	Zea mays uncharacterized LOC100276173 (LOC100276173), mRNA	NA	coding protein	psRNATarget
HI406128.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-|=||||||||||||||||| targets:74   AUAC-AUCUCAAUCCACUUCAAUC   96 Target Full Sequence	1.0	Sequence 4253 from Patent EP2074227	NA	coding protein	psRNATarget
JB166589.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-|=||||||||||||||||| targets:74   AUAC-AUCUCAAUCCACUUCAAUC   96 Target Full Sequence	1.0	Sequence 4253 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238258.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-|=||||||||||||||||| targets:74   AUAC-AUCUCAAUCCACUUCAAUC   96 Target Full Sequence	1.0	Sequence 4253 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008665228.2	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-||=|||||||||||||||| targets:731   AUAC-ACUUCAAUCCACUUCAAUC   753 Target Full Sequence	1.0	PREDICTED: Zea mays RNA-binding protein 3 (LOC103641920), mRNA	NA	coding protein	psRNATarget
EU950098.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-|=||||||||||||||||| targets:773   AUAC-AUCUCAAUCCACUUCAAUC   795 Target Full Sequence	1.0	Zea mays clone 461257 mRNA sequence	NA	coding protein	psRNATarget
BT061407.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-||=|||||||||||||||| targets:1079   AUAC-ACUUCAAUCCACUUCAAUC   1101 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0143D12 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008681984.2	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-|=||||||||||||||||| targets:1332   AUAC-AUCUCAAUCCACUUCAAUC   1354 Target Full Sequence	1.0	PREDICTED: Zea mays caleosin (LOC100285543), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU942361.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-|==|||||||||||||||| targets:505   AUAC-AUUUCAAUCCACUUCAAUC   527 Target Full Sequence	2.0	Zea mays clone 1487121 mRNA sequence	NA	coding protein	psRNATarget
EU968340.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-|=||=|||||||||||||| targets:710   AUAC-AUCUUAAUCCACUUCAAUC   732 Target Full Sequence	2.0	Zea mays clone 319179 mRNA sequence	NA	coding protein	psRNATarget
HI403033.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   *|||-||||||||||||||||||* targets:60   UUAC-ACCUCAAUCCACUUCAAUA   82 Target Full Sequence	1.0	Sequence 1158 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235163.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   *|||-||||||||||||||||||* targets:60   UUAC-ACCUCAAUCCACUUCAAUA   82 Target Full Sequence	1.0	Sequence 1158 from Patent EP2985353	NA	coding protein	psRNATarget
JB163494.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   *|||-||||||||||||||||||* targets:60   UUAC-ACCUCAAUCCACUUCAAUA   82 Target Full Sequence	1.0	Sequence 1158 from Patent EP2559767	NA	coding protein	psRNATarget
EU942844.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   *|*||||||||||||*|||||||| targets:193   UUUCCACCUCAAUCCUCUUCAAUC   216 Target Full Sequence	1.5	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
AY111447.2	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-|=|||||||||||*||||| targets:350   AUAC-AUCUCAAUCCACUCCAAUC   372 Target Full Sequence	2.5	Zea mays CL859_2 mRNA sequence	NA	coding protein	psRNATarget
BT067545.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-|=|||||||||||*||||| targets:1766   AUAC-AUCUCAAUCCACUCCAAUC   1788 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0086J10 mRNA, complete cds	NA	coding protein	psRNATarget
BT034601.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-|=|||||||||||*||||| targets:1947   AUAC-AUCUCAAUCCACUCCAAUC   1969 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0002L05 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137799.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-|=|||||||||||*||||| targets:1947   AUAC-AUCUCAAUCCACUCCAAUC   1969 Target Full Sequence	2.5	Zea mays putative protein kinase superfamily protein (LOC100192584), mRNA	NA	coding protein	psRNATarget
XM_020549588.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||||-|=|||||||||||*||||| targets:1428   AUAC-AUCUCAAUCCACUCCAAUC   1450 Target Full Sequence	2.5	PREDICTED: Zea mays major facilitator superfamily defense 1 (mfsd1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU951474.1	ncRNA:24   UAU---GGUGGAGUUAGGUGAAGUUAG   1   |||---|||*|||||||*||||||||| targets:122   AUAUCCCCAACUCAAUCAACUUCAAUC   148 Target Full Sequence	2.5	Zea mays clone 702184 mRNA sequence	NA	coding protein	psRNATarget
AY112376.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||-|||==*||||||||||||||| targets:385   AU-CCAUUCCAAUCCACUUCAAUC   407 Target Full Sequence	3.0	Zea mays CL41055_1 mRNA sequence	NA	coding protein	psRNATarget
XM_020544844.1	ncRNA:24   UAU---GGUGGAGUUAGGUGAAGUUAG   1   |||---|||*|||||||*||||||||| targets:749   AUAUCCCCAACUCAAUCAACUUCAAUC   775 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100191221 (LOC100191221), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020544843.1	ncRNA:24   UAU---GGUGGAGUUAGGUGAAGUUAG   1   |||---|||*|||||||*||||||||| targets:756   AUAUCCCCAACUCAAUCAACUUCAAUC   782 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100191221 (LOC100191221), transcript variant X1, mRNA	NA	coding protein	psRNATarget
NM_001136655.1	ncRNA:24   UAU---GGUGGAGUUAGGUGAAGUUAG   1   |||---|||*|||||||*||||||||| targets:959   AUAUCCCCAACUCAAUCAACUUCAAUC   985 Target Full Sequence	2.5	Zea mays uncharacterized LOC100191221 (LOC100191221), mRNA	NA	coding protein	psRNATarget
BT033257.1	ncRNA:24   UAU---GGUGGAGUUAGGUGAAGUUAG   1   |||---|||*|||||||*||||||||| targets:959   AUAUCCCCAACUCAAUCAACUUCAAUC   985 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0191N11 mRNA, complete cds	NA	coding protein	psRNATarget
BT085755.1	ncRNA:24   UAUG--GUGGAGUUAGGUGAAGUUAG   1   ||==--|||||||||||||*|||||* targets:878   AUGUUACACCUCAAUCCACCUCAAUA   903 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0057I16 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001156128.2	ncRNA:24   UAUG--GUGGAGUUAGGUGAAGUUAG   1   ||==--|||||||||||||*|||||* targets:878   AUGUUACACCUCAAUCCACCUCAAUA   903 Target Full Sequence	2.5	Zea mays protein SFT2 (LOC100283226), mRNA	NA	coding protein	psRNATarget
JB163782.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   *|||-|||*||||||||||||||* targets:60   UUAC-ACCCCAAUCCACUUCAAUA   82 Target Full Sequence	2.0	Sequence 1446 from Patent EP2559767	NA	coding protein	psRNATarget
JB163781.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   *|||-|||*||||||||||||||* targets:60   UUAC-ACCCCAAUCCACUUCAAUA   82 Target Full Sequence	2.0	Sequence 1445 from Patent EP2559767	NA	coding protein	psRNATarget
HI403320.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   *|||-|||*||||||||||||||* targets:60   UUAC-ACCCCAAUCCACUUCAAUA   82 Target Full Sequence	2.0	Sequence 1445 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235451.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   *|||-|||*||||||||||||||* targets:60   UUAC-ACCCCAAUCCACUUCAAUA   82 Target Full Sequence	2.0	Sequence 1446 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235450.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   *|||-|||*||||||||||||||* targets:60   UUAC-ACCCCAAUCCACUUCAAUA   82 Target Full Sequence	2.0	Sequence 1445 from Patent EP2985353	NA	coding protein	psRNATarget
HI403321.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   *|||-|||*||||||||||||||* targets:60   UUAC-ACCCCAAUCCACUUCAAUA   82 Target Full Sequence	2.0	Sequence 1446 from Patent EP2074227	NA	coding protein	psRNATarget
EU941642.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   *|||-||||||||||||*|||||* targets:8   UUAC-ACCUCAAUCCACCUCAAUA   30 Target Full Sequence	2.5	Zea mays clone 1468727 mRNA sequence	NA	coding protein	psRNATarget
XM_008667123.2	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   =***=|||||||||||||*||||| targets:2374   GCUGUACCUCAAUCCACUCCAAUC   2397 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667124.2	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   =***=|||||||||||||*||||| targets:2396   GCUGUACCUCAAUCCACUCCAAUC   2419 Target Full Sequence	1.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA	NA	coding protein	psRNATarget
JB163452.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||-|=*|||||||||*|||||||| targets:83   AU-CUCCCUCAAUCCCCUUCAAUC   105 Target Full Sequence	2.5	Sequence 1116 from Patent EP2559767	NA	coding protein	psRNATarget
HI402991.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||-|=*|||||||||*|||||||| targets:83   AU-CUCCCUCAAUCCCCUUCAAUC   105 Target Full Sequence	2.5	Sequence 1116 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235121.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||-|=*|||||||||*|||||||| targets:83   AU-CUCCCUCAAUCCCCUUCAAUC   105 Target Full Sequence	2.5	Sequence 1116 from Patent EP2985353	NA	coding protein	psRNATarget
BT017823.1	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||=--=|||||||||*|||||||| targets:852   AUG--GCCUCAAUCCUCUUCAAUC   873 Target Full Sequence	2.5	Zea mays clone EL01N0508B10.c mRNA sequence	NA	coding protein	psRNATarget
XM_008651631.2	ncRNA:24   UAUGGUGGAGUUAGGUGAAGUUAG   1   ||=--=|||||||||*|||||||| targets:3480   AUG--GCCUCAAUCCUCUUCAAUC   3501 Target Full Sequence	2.5	PREDICTED: Zea mays Topoisomerase II-associated protein PAT1 (LOC103630586), mRNA	NA	coding protein	psRNATarget