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BaseInfo

ncRNA ID	novel_zma_miR915
Species	Zea mays
Class	miRNA
Genome position	Chr2:53404993-53405045 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR5451003;SRR5451004;SRR1997866
Length	24
Mature sequence(if miRNA)	30 - ACCGGACUGUUCGGUGCGCCAGAC - 53
Stem-loop(if miRNA)	--               CU           CUGGUGCACCGGACA  GUCCGGUGG   |||||||||||||||  ||||||||C   GACCGCGUGGCUUGU  CAGGCCACA CA               --
Stem-loop sequence	CUGGUGCACCGGACACUGUCCGGUGGCACACCGGACUGUUCGGUGCGCCAGAC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT068112.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   |||||||||||||=|||||||||| targets:374   GUCUGGCGCACCGGACAGUCCGGU   397 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *****||*|||||=|||||||||| targets:469   CCGGUGCACACCGGACAGUCCGGU   492 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *||||||||||||=|||||||||| targets:579   AUCUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *||*|||||||||=|||||||||| targets:483   AUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *****||*|||||=|||||||||| targets:598   CCGGUGCACACCGGACAGUCCGGU   621 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *||||||||||||=|||||||||| targets:579   AUCUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *||*|||||||||=|||||||||| targets:483   AUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *****||*|||||=|||||||||| targets:598   CCGGUGCACACCGGACAGUCCGGU   621 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
EZ066204.1	ncRNA:24   CAG---ACCGCGUGGCUUGUCAGGCCA   1   |||---||||||||||=|||||||||| targets:86   GUCGCAUGGCGCACCGGACAGUCCGGU   112 Target Full Sequence	1.5	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   |||*|||||||||=|||||||||| targets:495   GUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *****||*|||||=|||||||||| targets:621   CCGGUGCACACCGGACAGUCCGGU   644 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *****||*|||||=|||||||||| targets:838   CCGGUGCACACCGGACAGUCCGGU   861 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   |||*|||||||||=|||||||||| targets:495   GUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *****||*|||||=|||||||||| targets:621   CCGGUGCACACCGGACAGUCCGGU   644 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *****||*|||||=|||||||||| targets:838   CCGGUGCACACCGGACAGUCCGGU   861 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   **|*|||||||||=|||||||||| targets:330   CACGGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *****||*|||||=|||||||||| targets:446   CCGGUGCACACCGGACAGUCCGGU   469 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   **|*|||||||||=|||||||||| targets:330   CACGGGCGCACCGGACAGUCCGGU   353 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *****||*|||||=|||||||||| targets:446   CCGGUGCACACCGGACAGUCCGGU   469 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CAG---ACCGCGUGGCUUGUCAGGCCA   1   |||---||||||||||=|||||||||| targets:470   GUCGCAUGGCGCACCGGACAGUCCGGU   496 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CAG---ACCGCGUGGCUUGUCAGGCCA   1   |||---||||*|||||=|||||||||| targets:794   GUCCGGUGGCACACCGGACAGUCCGGU   820 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   **|||||*|||||=|||||||||| targets:695   CGCUGGCACACCGGACAGUCCGGU   718 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CAG---ACCGCGUGGCUUGUCAGGCCA   1   |||---||||||||||=|||||||||| targets:486   GUCGAGUGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   |*|||||||||||=|||||||||| targets:778   GCCUGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CAG---ACCGCGUGGCUUGUCAGGCCA   1   |||---||||||||||=|||||||||| targets:486   GUCGAGUGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   |*|||||||||||=|||||||||| targets:778   GCCUGGCGCACCGGACAGUCCGGU   801 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   |*|||||||||||=|||||||||| targets:503   GCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   ||-||||||||||=|||||||||| targets:600   GU-UGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   |*|||||||||||=|||||||||| targets:503   GCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   ||-||||||||||=|||||||||| targets:600   GU-UGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   |*|||||||||||=|||||||||| targets:2538   GACUGGCGCACCGGACAGUCCGGU   2561 Target Full Sequence	1.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   ||-||||*|||||=|||||||||| targets:2750   GU-UGGCUCACCGGACAGUCCGGU   2772 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CA---GACCGCGUGGCUUGUCAGGCCA   1   ||---||||=||||||=|||||||||| targets:88   GUUCCCUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   **|||||*|||||=|||||||||| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CA---GACCGCGUGGCUUGUCAGGCCA   1   ||---||||=||||||=|||||||||| targets:88   GUUCCCUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   **|||||*|||||=|||||||||| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CA---GACCGCGUGGCUUGUCAGGCCA   1   ||---||||=||||||=|||||||||| targets:88   GUUCCCUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   **|||||*|||||=|||||||||| targets:10   CACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   CAG---ACCGCGUGGCUUGUCAGGCCA   1   |||---|||=||||||=|||||||||| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.5	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   CAG---ACCGCGUGGCUUGUCAGGCCA   1   |||---|||=||||||=|||||||||| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.5	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   CAG---ACCGCGUGGCUUGUCAGGCCA   1   |||---|||=||||||=|||||||||| targets:144   GUCGAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.5	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   CA---GACCGCGUGGCUUGUCAGGCCA   1   ||---||||=||||||=|||||||||| targets:758   GUGCCCUGGUGCACCGGACAGUCCGGU   784 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   |||*||=||||||=|||||||||| targets:584   GUCGGGUGCACCGGACAGUCCGGU   607 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   |||*||=||||||=|||||||||| targets:136   GUCGGGUGCACCGGACAGUCCGGU   159 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
BT086229.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   |*||||=||||||=|||||||||| targets:828   GCCUGGUGCACCGGACAGUCCGGU   851 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0134M03 mRNA, complete cds	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CAG---ACCGCGUGGCUUGUCAGGCCA   1   |||---|||*||||||=|||||||||| targets:175   GUCGGGUGGAGCACCGGACAGUCCGGU   201 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *****||*|||||=|||||||||| targets:294   ACGGUGCACACCGGACAGUCCGGU   317 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   **||||=||||||=|||||||||| targets:821   CGCUGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   |*=*||=||||||=|||||||||| targets:587   GAUGGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   **||||=||||||=|||||||||| targets:821   CGCUGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   |*=*||=||||||=|||||||||| targets:587   GAUGGGUGCACCGGACAGUCCGGU   610 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
EZ065990.1	ncRNA:21   ACCGCGUGGCUUGUCAGGCCA   1   ||||||||||=|||||||||| targets:1   UGGCGCACCGGACAGUCCGGU   21 Target Full Sequence	1.5	TSA: Zea mays contig01624, mRNA sequence	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   ||-||||*|||||=|||||||||| targets:706   GU-UGGCUCACCGGACAGUCCGGU   728 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   *||*|||||||||=|||||||||| targets:4377   AUCGGGCGCACCGGACAGUCCGGU   4400 Target Full Sequence	1.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   ||-||||*|||||=|||||||||| targets:688   GU-UGGCUCACCGGACAGUCCGGU   710 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   CAGACCGCGUGGCUUGUCAGGCCA   1   ||-||||*|||||=|||||||||| targets:688   GU-UGGCUCACCGGACAGUCCGGU   710 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:24   CAG---ACCGCGUGGCUUGUCAGGCCA   1   |||---||||*|||||=|||||||||| targets:91   GUCCGGUGGCACACCGGACAGUCCGGU   117 Target Full Sequence	2.5	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget