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BaseInfo

ncRNA ID novel_zma_miR913
Species Zea mays
Class miRNA
Genome position Chr10:90135153-90135273 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089711;SRR2089712;SRR2089715;SRR2287161;SRR2287165
Length 24
Mature sequence(if miRNA) 1 - AUGGAAUAAAGUGGAGGGACUAAU - 24
Stem-loop(if miRNA) --         A                  C  -      AC      UA          C
  UAGUCCCUC AUUUUAUUCCAUUUUAGU UC UAAAUU  UAAAUA  GAAACUAAAA U
  ||||||||| |||||||||||||||||| || ||||||  ||||||  |||||||||| C
  AUCAGGGAG UGAAAUAAGGUAAAAUCA AG AUUUAA  AUUUAU  CUUUGAUUUU U
UA         G                  -  U      CA      CC          A
Stem-loop sequence UAGUCCCUCAAUUUUAUUCCAUUUUAGUCUCUAAAUUACUAAAUAUAGAAACUAAAACUCUAUUUUAGUUUCCCUAUUUAACAAUUUAUGAACUAAAAUGGAAUAAAGUGGAGGGACUAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT019141.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||||||||=||||||||||
targets:291   UUUAGUCCCUCCAUUUUAUUCCAU   314

1.5 Zea mays clone Contig786.F mRNA sequence NA coding protein psRNATarget
EU967664.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||=||||||||||||||||
targets:1123   UUUAGUCUCUCCACUUUAUUCCAU   1146

1.0 Zea mays clone 305169 NADH-cytochrome b5 reductase mRNA, complete cds NA coding protein psRNATarget
NM_001112602.2
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||=||||||||||||||||
targets:1123   UUUAGUCUCUCCACUUUAUUCCAU   1146

1.0 Zea mays ferric-chelate reductase (NADH)2 (fcr2), mRNA NA coding protein psRNATarget
HI406713.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||||||||=||||||||||
targets:166   UUUAGUCCCUCCAUUUUAUUCCAU   189

1.5 Sequence 4838 from Patent EP2074227 NA coding protein psRNATarget
JB167174.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||||||||=||||||||||
targets:166   UUUAGUCCCUCCAUUUUAUUCCAU   189

1.5 Sequence 4838 from Patent EP2559767 NA coding protein psRNATarget
LQ238843.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||||||||=||||||||||
targets:166   UUUAGUCCCUCCAUUUUAUUCCAU   189

1.5 Sequence 4838 from Patent EP2985353 NA coding protein psRNATarget
LQ238549.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||||||||=||||||||||
targets:75   UUUAGUCCCUCCAUUUUAUUCCAU   98

1.5 Sequence 4544 from Patent EP2985353 NA coding protein psRNATarget
JB166880.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||||||||=||||||||||
targets:75   UUUAGUCCCUCCAUUUUAUUCCAU   98

1.5 Sequence 4544 from Patent EP2559767 NA coding protein psRNATarget
HI406419.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||||||||=||||||||||
targets:75   UUUAGUCCCUCCAUUUUAUUCCAU   98

1.5 Sequence 4544 from Patent EP2074227 NA coding protein psRNATarget
XM_020545045.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||=|||||=||||||||||
targets:2148   CUUAGUCUCUCCAUUUUAUUCCAU   2171

2.5 PREDICTED: Zea mays CAB2 (LOC100281582), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550478.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *|||||||||=||=||||||||||
targets:2647   UUUAGUCCCUUCAUUUUAUUCCAU   2670

2.5 PREDICTED: Zea mays uncharacterized LOC103651221 (LOC103651221), mRNA NA coding protein psRNATarget
NM_001174830.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *|||||||||=||=||||||||||
targets:2096   UUUAGUCCCUUCAUUUUAUUCCAU   2119

2.5 Zea mays Tubulin binding cofactor C domain-containing protein (LOC100382067), mRNA NA coding protein psRNATarget
BT063047.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *|||||||||=||=||||||||||
targets:2096   UUUAGUCCCUUCAUUUUAUUCCAU   2119

2.5 Zea mays full-length cDNA clone ZM_BFc0019F15 mRNA, complete cds NA coding protein psRNATarget
LQ235182.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *|||||||||=||=||||||||||
targets:26   UUUAGUCCCUUCAUUUUAUUCCAU   49

2.5 Sequence 1177 from Patent EP2985353 NA coding protein psRNATarget
JB163513.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *|||||||||=||=||||||||||
targets:26   UUUAGUCCCUUCAUUUUAUUCCAU   49

2.5 Sequence 1177 from Patent EP2559767 NA coding protein psRNATarget
HI403052.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *|||||||||=||=||||||||||
targets:26   UUUAGUCCCUUCAUUUUAUUCCAU   49

2.5 Sequence 1177 from Patent EP2074227 NA coding protein psRNATarget
XM_008647122.2
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||||||||=|||||||||*
targets:2986   UUUAGUCCCUCCAUUUUAUUCCAC   3009

2.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X1, mRNA NA coding protein psRNATarget
XM_008647123.2
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||||||||=|||||||||*
targets:2597   UUUAGUCCCUCCAUUUUAUUCCAC   2620

2.5 PREDICTED: Zea mays ribonuclease J (LOC103626744), transcript variant X2, mRNA NA coding protein psRNATarget
XM_008651702.2
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||||||||=|||||||||*
targets:479   UUUAGUCCCUCCAUUUUAUUCCAC   502

2.5 PREDICTED: Zea mays type IV inositol polyphosphate 5-phosphatase 3 (LOC103630655), transcript variant X3, mRNA NA coding protein psRNATarget
EU945607.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||||||||*||||||||||
targets:140   UUUAGUCCCUCCAAUUUAUUCCAU   163

1.5 Zea mays clone 279279 mRNA sequence NA coding protein psRNATarget
HI402994.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *|||||||||*|||||||||||||
targets:26   UUUAGUCCCUACACUUUAUUCCAU   49

1.0 Sequence 1119 from Patent EP2074227 NA coding protein psRNATarget
JB163455.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *|||||||||*|||||||||||||
targets:26   UUUAGUCCCUACACUUUAUUCCAU   49

1.0 Sequence 1119 from Patent EP2559767 NA coding protein psRNATarget
LQ235124.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *|||||||||*|||||||||||||
targets:26   UUUAGUCCCUACACUUUAUUCCAU   49

1.0 Sequence 1119 from Patent EP2985353 NA coding protein psRNATarget
XM_020542840.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *|||||||||*||=||||||||||
targets:996   UUUAGUCCCUACAUUUUAUUCCAU   1019

2.5 PREDICTED: Zea mays hypothetical protein (LOC103636172), transcript variant X1, mRNA NA coding protein psRNATarget
LQ238744.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *|||||||*||||||||||||=||
targets:154   UUUAGUCCAUCCACUUUAUUCUAU   177

2.5 Sequence 4739 from Patent EP2985353 NA coding protein psRNATarget
JB167075.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *|||||||*||||||||||||=||
targets:154   UUUAGUCCAUCCACUUUAUUCUAU   177

2.5 Sequence 4739 from Patent EP2559767 NA coding protein psRNATarget
HI406614.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *|||||||*||||||||||||=||
targets:154   UUUAGUCCAUCCACUUUAUUCUAU   177

2.5 Sequence 4739 from Patent EP2074227 NA coding protein psRNATarget
JB169209.1
ncRNA:23   AAUCAGGGAGGUGAAAUAAGGUA   1
  |||||||*||||||||||||=||
targets:1   UUAGUCCAUCCACUUUAUUCUAU   23

2.5 Sequence 6873 from Patent EP2559767 NA coding protein psRNATarget
LQ240878.1
ncRNA:23   AAUCAGGGAGGUGAAAUAAGGUA   1
  |||||||*||||||||||||=||
targets:1   UUAGUCCAUCCACUUUAUUCUAU   23

2.5 Sequence 6873 from Patent EP2985353 NA coding protein psRNATarget
HI408748.1
ncRNA:23   AAUCAGGGAGGUGAAAUAAGGUA   1
  |||||||*||||||||||||=||
targets:1   UUAGUCCAUCCACUUUAUUCUAU   23

2.5 Sequence 6873 from Patent EP2074227 NA coding protein psRNATarget
XM_020552869.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||||||||*|||||||||*
targets:1656   UUUAGUCCCUCCAAUUUAUUCCAC   1679

2.5 PREDICTED: Zea mays NADPH:adrenodoxin oxidoreductase, mitochondrial-like (LOC109946102), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550132.1
ncRNA:24   UAAUCAGGGAGGUGAAAUAAGGUA   1
  *||||||||||||*|||||||||*
targets:17   UUUAGUCCCUCCAAUUUAUUCCAC   40

2.5 PREDICTED: Zea mays putrescine hydroxycinnamoyltransferase 1-like (LOC103649816), transcript variant X1, mRNA NA coding protein psRNATarget
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