Search result

BaseInfo

ncRNA ID novel_zma_miR910
Species Zea mays
Class miRNA
Genome position Chr2:3262843-3262930 [-]
Reference genome RefGen_v4
Source SRR2089710
Length 21
Mature sequence(if miRNA) 68 - CGGACUGUCCGGUGGCCCCAG - 88
Stem-loop(if miRNA) --C    U        G C     G  CAGA  U     G  C  
   GGAC GUCCGGUG C CCAGU AU    GC CCAAC GU GGA
   |||| |||||||| | ||||| ||    || ||||| || ||A
   CUUG CAGGCCAC G GGUCG UG    UG GGUUG CA CCC
UGA    U        - C     G  -CAG  -     G  A  
Stem-loop sequence CGGACUGUCCGGUGGCCCCAGUGAUCAGAGCUCCAACGGUCGGAACCCAACGGUUGGGUGACGUGGCUGGCGCACCGGACUGUUCAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU940831.1
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:408   CCGGUGCACACCGGACAGUCCG   429

3.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
EU940831.1
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  **||*||-||||||||||||||
targets:294   ACGGUGCACACCGGACAGUCCG   315

3.0 Zea mays clone 1157596 mRNA sequence NA coding protein psRNATarget
NM_001176828.1
ncRNA:21   GACCCCGGUGGCCUGUCAGGC   1
  ||||||*||||||||*|||||
targets:470   CUGGGGGCACCGGACUGUCCG   490

2.5 Zea mays uncharacterized LOC100384263 (LOC100384263), mRNA NA coding protein psRNATarget
BT069634.1
ncRNA:21   GACCCCGGUGGCCUGUCAGGC   1
  ||||||*||||||||*|||||
targets:470   CUGGGGGCACCGGACUGUCCG   490

2.5 Zea mays full-length cDNA clone ZM_BFb0193J19 mRNA, complete cds NA coding protein psRNATarget
NM_001165868.1
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:621   CCGGUGCACACCGGACAGUCCG   642

3.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
NM_001165868.1
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:735   CCGGUGCACACCGGACAGUCCG   756

3.0 Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA NA coding protein psRNATarget
BT061141.2
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:621   CCGGUGCACACCGGACAGUCCG   642

3.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT061141.2
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:735   CCGGUGCACACCGGACAGUCCG   756

3.0 Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds NA coding protein psRNATarget
BT066811.2
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:696   CCGGUGCACACCGGACAGUCCG   717

3.0 Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds NA coding protein psRNATarget
NM_001175949.1
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:696   CCGGUGCACACCGGACAGUCCG   717

3.0 Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA NA coding protein psRNATarget
XM_020546123.1
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:4493   CCGGUGCACACCGGACAGUCCG   4514

3.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
XM_020546123.1
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:4608   CCGGUGCACACCGGACAGUCCG   4629

3.0 PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA NA coding protein psRNATarget
EU964336.1
ncRNA:21   GACCCCGGUGGCCUGUCAGGC   1
  **||||*||||||||*|||||
targets:455   AAGGGGGCACCGGACUGUCCG   475

2.5 Zea mays clone 278065 mRNA sequence NA coding protein psRNATarget
BT068112.2
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:469   CCGGUGCACACCGGACAGUCCG   490

3.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT068112.2
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:599   CCGGUGCACACCGGACAGUCCG   620

3.0 Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds NA coding protein psRNATarget
BT065921.2
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:713   CCGGUGCACACCGGACAGUCCG   734

3.0 Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds NA coding protein psRNATarget
NM_001175687.1
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:713   CCGGUGCACACCGGACAGUCCG   734

3.0 Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA NA coding protein psRNATarget
BT061123.2
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:282   CCGGUGCACACCGGACAGUCCG   303

3.0 Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds NA coding protein psRNATarget
NM_001165861.1
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:446   CCGGUGCACACCGGACAGUCCG   467

3.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
NM_001165861.1
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:560   CCGGUGCACACCGGACAGUCCG   581

3.0 Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA NA coding protein psRNATarget
BT061124.2
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:446   CCGGUGCACACCGGACAGUCCG   467

3.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
BT061124.2
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:560   CCGGUGCACACCGGACAGUCCG   581

3.0 Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds NA coding protein psRNATarget
EU940974.1
ncRNA:21   GACCCCGGUGGCCUGUCAGGC   1
  *|*||*=||||||||||||||
targets:2750   GUUGGCUCACCGGACAGUCCG   2770

3.0 Zea mays clone 1225259 mRNA sequence NA coding protein psRNATarget
EU947920.1
ncRNA:21   GACCCCGGUGGCCUGUCAGGC   1
  *|||||*||||||||*|||||
targets:394   AUGGGGGCACCGGACUGUCCG   414

2.5 Zea mays clone 366338 mRNA sequence NA coding protein psRNATarget
LQ242178.1
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:108   CCGGUGCACACCGGACAGUCCG   129

3.0 Sequence 8173 from Patent EP2985353 NA coding protein psRNATarget
JB170509.1
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:108   CCGGUGCACACCGGACAGUCCG   129

3.0 Sequence 8173 from Patent EP2559767 NA coding protein psRNATarget
HI410048.1
ncRNA:21   GACCCCG-GUGGCCUGUCAGGC   1
  |*||*||-||||||||||||||
targets:108   CCGGUGCACACCGGACAGUCCG   129

3.0 Sequence 8173 from Patent EP2074227 NA coding protein psRNATarget
EU948808.1
ncRNA:21   GACCCCGGUGGCCUGUCAGGC   1
  |*||||*||||||||*|||||
targets:749   CAGGGGGCACCGGACUGUCCG   769

2.5 Zea mays clone 385792 mRNA sequence NA coding protein psRNATarget
NM_001176839.1
ncRNA:21   GACCCCGGUGGCCUGUCAGGC   1
  |*||||*||||||||*|||||
targets:1735   CAGGGGGCACCGGACUGUCCG   1755

2.5 Zea mays uncharacterized LOC100384275 (LOC100384275), mRNA NA coding protein psRNATarget
BT069667.1
ncRNA:21   GACCCCGGUGGCCUGUCAGGC   1
  |*||||*||||||||*|||||
targets:1735   CAGGGGGCACCGGACUGUCCG   1755

2.5 Zea mays full-length cDNA clone ZM_BFb0206D24 mRNA, complete cds NA coding protein psRNATarget
© 2017 OPP-ncRBASE. All rights reserved.