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BaseInfo

ncRNA ID novel_zma_miR905
Species Zea mays
Class miRNA
Genome position Chr10:91846279-91846361 [-]
Reference genome RefGen_v4
Source SRR2089710;SRR2089713;SRR2089714;SRR2089715;SRR2287031;SRR2287162;SRR2287164;SRR1997865;SRR5451003;SRR5451004;SRR2089699;SRR2089701;SRR2089703;SRR2089705;SRR2089706
Length 23
Mature sequence(if miRNA) 61 - GGGCUUCGUGCCGGGCUCGUGGG - 83
Stem-loop(if miRNA) ---G    U    C     UC   G  C    G       GAC
    GGCU CGUG CGGGC  GUG GC UCGU CUUAUUG   A
    |||| |||| |||||  ||| || |||| |||||||
    CUGA GUAC GUCCG  CGU CG AGUA GAGUGAU   U
GACA    -    U     UA   G  U    -       AUC
Stem-loop sequence GGGCUUCGUGCCGGGCUCGUGGGCCUCGUGCUUAUUGGACAUCUAUAGUGAGAUGAUGCGUGCAUGCCUGUCAUGAGUCACAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_008671112.2
ncRNA:23   GGGUGCUCGGGCCGUGCUUCGGG   1
  |=|=|||||||||||||||||||
targets:1068   CUCGCGAGCCCGGCACGAAGCCC   1090

0.0 PREDICTED: Zea mays uncharacterized LOC103646381 (LOC103646381), mRNA NA coding protein psRNATarget
XM_020545884.1
ncRNA:23   GGGUGCUCGGGCCGUGCUUCGGG   1
  |||=|||||||||||||||||*|
targets:2747   CCCGCGAGCCCGGCACGAAGCAC   2769

1.5 PREDICTED: Zea mays E3 ubiquitin-protein ligase PUB23 (LOC103642284), mRNA NA coding protein psRNATarget
XM_008659605.1
ncRNA:23   GGGUGCUCGGGCCGUGCUUCGGG   1
  |=|-||||*|||||=||||||||
targets:330   CUC-CGAGGCCGGCGCGAAGCCC   351

2.5 PREDICTED: Zea mays uncharacterized LOC103637404 (LOC103637404), mRNA NA coding protein psRNATarget