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BaseInfo

ncRNA ID	novel_zma_miR903
Species	Zea mays
Class	miRNA
Genome position	Chr2:29646307-29646359 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089708
Length	24
Mature sequence(if miRNA)	1 - ACAGGACUGUCCGGUGCGCCAUGC - 24
Stem-loop(if miRNA)	--C              GU    GAUG    UGGCGCACCGGACA  GUCC    G    ||||||||||||||  ||||    C    ACCGCGUGGCCUGU  CAGG    G CGU              --    ACAC
Stem-loop sequence	CUGGCGCACCGGACAGUGUCCGAUGGCGCACAGGACUGUCCGGUGCGCCAUGC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
EZ066204.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   |||||||||||||||||||||*|| targets:89   GCAUGGCGCACCGGACAGUCCGGU   112 Target Full Sequence	1.5	TSA: Zea mays contig01838, mRNA sequence	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   |||||||||||||||||||||*|| targets:473   GCAUGGCGCACCGGACAGUCCGGU   496 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ||-||||*|||||||||||||*|| targets:696   GC-UGGCACACCGGACAGUCCGGU   718 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT083610.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   **=||||*|||||||||||||*|| targets:797   CGGUGGCACACCGGACAGUCCGGU   820 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0019A02 mRNA, complete cds	NA	coding protein	psRNATarget
BT069074.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   *|*|||=||||||||||||||*|| targets:761   CCCUGGUGCACCGGACAGUCCGGU   784 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158J22 mRNA, complete cds	NA	coding protein	psRNATarget
BT066013.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   |*=||||||||||||||||||*|| targets:489   GAGUGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0155M15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175715.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   |*=||||||||||||||||||*|| targets:489   GAGUGGCGCACCGGACAGUCCGGU   512 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383038 (LOC100383038), mRNA	NA	coding protein	psRNATarget
EZ109126.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   **|||||||||||||||||||*|| targets:173   UGAUGGCGCACCGGACAGUCCGGU   196 Target Full Sequence	1.5	TSA: Zea mays contig44785, mRNA sequence	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ||*||||||||||||||||||*|| targets:503   GCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||||||||||||||||*|| targets:599   CGUUGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
NM_001175687.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:694   CGUUGGCUCACCGGACAGUCCGGU   717 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383005 (LOC100383005), mRNA	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ||*||||||||||||||||||*|| targets:503   GCCUGGCGCACCGGACAGUCCGGU   526 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||||||||||||||||*|| targets:599   CGUUGGCGCACCGGACAGUCCGGU   622 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT065921.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:694   CGUUGGCUCACCGGACAGUCCGGU   717 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0044K19 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CGU----ACCGCGUGGCCUGUCAGGACA   1   |||----||||||||||||||||||*|| targets:575   GCAGAUCUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CGUA--CCGCGUGGCCUGUCAGGACA   1   *|||--|||||||||||||||||*|| targets:481   UCAUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
BT066811.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:677   CGUUGGCUCACCGGACAGUCCGGU   700 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0073A15 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CGU----ACCGCGUGGCCUGUCAGGACA   1   |||----||||||||||||||||||*|| targets:575   GCAGAUCUGGCGCACCGGACAGUCCGGU   602 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CGUA--CCGCGUGGCCUGUCAGGACA   1   *|||--|||||||||||||||||*|| targets:481   UCAUCGGGCGCACCGGACAGUCCGGU   506 Target Full Sequence	1.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
NM_001175949.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:677   CGUUGGCUCACCGGACAGUCCGGU   700 Target Full Sequence	2.5	Zea mays uncharacterized LOC100383289 (LOC100383289), mRNA	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   |=*||||||||||||||||||*|| targets:374   GUCUGGCGCACCGGACAGUCCGGU   397 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
BT068112.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:580   CGUUGGCUCACCGGACAGUCCGGU   603 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0045K13 mRNA, complete cds	NA	coding protein	psRNATarget
EZ065990.1	ncRNA:21   ACCGCGUGGCCUGUCAGGACA   1   ||||||||||||||||||*|| targets:1   UGGCGCACCGGACAGUCCGGU   21 Target Full Sequence	1.5	TSA: Zea mays contig01624, mRNA sequence	NA	coding protein	psRNATarget
XM_020546123.1	ncRNA:24   CGUA--CCGCGUGGCCUGUCAGGACA   1   *|||--|||||||||||||||||*|| targets:4375   UCAUCGGGCGCACCGGACAGUCCGGU   4400 Target Full Sequence	1.5	PREDICTED: Zea mays protein NUCLEAR FUSION DEFECTIVE 4-like (LOC103641819), mRNA	NA	coding protein	psRNATarget
HI410113.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   |*=|||=||||||||||||||*|| targets:147   GAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.5	Sequence 8238 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242243.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   |*=|||=||||||||||||||*|| targets:147   GAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.5	Sequence 8238 from Patent EP2985353	NA	coding protein	psRNATarget
JB170574.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   |*=|||=||||||||||||||*|| targets:147   GAGUGGUGCACCGGACAGUCCGGU   170 Target Full Sequence	2.5	Sequence 8238 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001174416.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ||-|||=||||||||||||||*|| targets:822   GC-UGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	2.5	Zea mays uncharacterized LOC100381596 (LOC100381596), mRNA	NA	coding protein	psRNATarget
BT061709.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ||-|||=||||||||||||||*|| targets:822   GC-UGGUGCACCGGACAGUCCGGU   844 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0176K17 mRNA, complete cds	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   |**||||||||||||||||||*|| targets:2538   GACUGGCGCACCGGACAGUCCGGU   2561 Target Full Sequence	1.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
EU940974.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:2749   CGUUGGCUCACCGGACAGUCCGGU   2772 Target Full Sequence	2.5	Zea mays clone 1225259 mRNA sequence	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   *|*|||=||||||||||||||*|| targets:91   CCCUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
HI409410.1	ncRNA:24   CGU-ACCGCGUGGCCUGUCAGGACA   1   *||-||||*|||||||||||||*|| targets:9   CCACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2074227	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   *|*|||=||||||||||||||*|| targets:91   CCCUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
JB169871.1	ncRNA:24   CGU-ACCGCGUGGCCUGUCAGGACA   1   *||-||||*|||||||||||||*|| targets:9   CCACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   *|*|||=||||||||||||||*|| targets:91   CCCUGGUGCACCGGACAGUCCGGU   114 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241540.1	ncRNA:24   CGU-ACCGCGUGGCCUGUCAGGACA   1   *||-||||*|||||||||||||*|| targets:9   CCACUGGCACACCGGACAGUCCGGU   33 Target Full Sequence	2.5	Sequence 7535 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CGUA--CCGCGUGGCCUGUCAGGACA   1   *|=|--|||||||||||||||||*|| targets:493   UCGUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	1.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
NM_001165868.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:716   CGUUGGCUCACCGGACAGUCCGGU   739 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304434 (LOC100304434), mRNA	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CGUA--CCGCGUGGCCUGUCAGGACA   1   *|=|--|||||||||||||||||*|| targets:493   UCGUCGGGCGCACCGGACAGUCCGGU   518 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
BT061141.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:716   CGUUGGCUCACCGGACAGUCCGGU   739 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0115B09 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001165861.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:541   CGUUGGCUCACCGGACAGUCCGGU   564 Target Full Sequence	2.5	Zea mays uncharacterized LOC100304427 (LOC100304427), mRNA	NA	coding protein	psRNATarget
BT061124.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:541   CGUUGGCUCACCGGACAGUCCGGU   564 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108N24 mRNA, complete cds	NA	coding protein	psRNATarget
BT068871.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:687   UGUUGGCUCACCGGACAGUCCGGU   710 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0146G02 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001176621.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:687   UGUUGGCUCACCGGACAGUCCGGU   710 Target Full Sequence	2.5	Zea mays uncharacterized LOC100384010 (LOC100384010), mRNA	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   |*=|||*||||||||||||||*|| targets:178   GGGUGGAGCACCGGACAGUCCGGU   201 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940831.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:389   CGUUGGCUCACCGGACAGUCCGGU   412 Target Full Sequence	2.5	Zea mays clone 1157596 mRNA sequence	NA	coding protein	psRNATarget
EU940845.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   *|=||||*|||||||||||||*|| targets:1379   CCGUGGCACACCGGACAGUCCGGU   1402 Target Full Sequence	2.5	Zea mays clone 1163633 mRNA sequence	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   CGUA--CCGCGUGGCCUGUCAGGACA   1   *|=|--||=||||||||||||||*|| targets:582   UCGUCGGGUGCACCGGACAGUCCGGU   607 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT065201.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:722   CGUUGGCACACCGGACAGUCCGGU   745 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0032D05 mRNA, complete cds	NA	coding protein	psRNATarget
BT061123.2	ncRNA:24   CGUA--CCGCGUGGCCUGUCAGGACA   1   *|=|--||=||||||||||||||*|| targets:134   UCGUCGGGUGCACCGGACAGUCCGGU   159 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0108I22 mRNA, complete cds	NA	coding protein	psRNATarget
LQ242062.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   **=||||*|||||||||||||*|| targets:29   UGGUGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 8057 from Patent EP2985353	NA	coding protein	psRNATarget
HI409932.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   **=||||*|||||||||||||*|| targets:29   UGGUGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 8057 from Patent EP2074227	NA	coding protein	psRNATarget
JB170393.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   **=||||*|||||||||||||*|| targets:29   UGGUGGCCCACCGGACAGUCCGGU   52 Target Full Sequence	2.5	Sequence 8057 from Patent EP2559767	NA	coding protein	psRNATarget
EZ106959.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   **=||||*|||||||||||||*|| targets:94   CGGUGGCACACCGGACAGUCCGGU   117 Target Full Sequence	2.5	TSA: Zea mays contig42617, mRNA sequence	NA	coding protein	psRNATarget
BT066461.2	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   ***||||*|||||||||||||*|| targets:705   CGUUGGCUCACCGGACAGUCCGGU   728 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0008E18 mRNA, complete cds	NA	coding protein	psRNATarget
EU971710.1	ncRNA:24   CGUACCGCGUGGCCUGUCAGGACA   1   |*|*||*|||||||||*||||||| targets:297   GAAGGGGGCACCGGACUGUCCUGU   320 Target Full Sequence	2.5	Zea mays clone 369445 mRNA sequence	NA	coding protein	psRNATarget