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BaseInfo

ncRNA ID	novel_zma_miR902
Species	Zea mays
Class	miRNA
Genome position	Chr2:30382491-30382606 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089713;SRR2089698;SRR2089708
Length	22
Mature sequence(if miRNA)	1 - CAAUACAUGUGGAUUGAGGUGA - 22
Stem-loop(if miRNA)	--                      G  A   A  G      AUGUAUUG         GGU   ACUUCAAUUCACAUGUAUUGAG UG AUU GA UGUAAC        AGAUUAAUU   G   |||||||||||||||||||||| || ||| || ||||||        |||||||||   UGGAGUUAGGUGUACAUAACUC AU UAA CU ACAUUG        UUUGAUUAA   U AG                      G  C   C  A      ------AA         AUG
Stem-loop sequence	ACUUCAAUUCACAUGUAUUGAGGUGAAUUAGAGUGUAACAUGUAUUGAGAUUAAUUGGUGUGUAAAUUAGUUUAAGUUACAAUCCAAUCUAGCUCAAUACAUGUGGAUUGAGGUGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
HI403009.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||||||||||||||||||||| targets:8   UCACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1134 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235139.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||||||||||||||||||||| targets:8   UCACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1134 from Patent EP2985353	NA	coding protein	psRNATarget
JB163470.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||||||||||||||||||||| targets:8   UCACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1134 from Patent EP2559767	NA	coding protein	psRNATarget
JB163457.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||||||||||||||||||||| targets:8   UCACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1121 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235126.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||||||||||||||||||||| targets:8   UCACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1121 from Patent EP2985353	NA	coding protein	psRNATarget
HI402996.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||||||||||||||||||||| targets:8   UCACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1121 from Patent EP2074227	NA	coding protein	psRNATarget
JB167413.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||=||||||||||||||=||| targets:8   UCAUCUCAAUCCACAUGUGUUG   29 Target Full Sequence	2.5	Sequence 5077 from Patent EP2559767	NA	coding protein	psRNATarget
LQ239082.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||=||||||||||||||=||| targets:8   UCAUCUCAAUCCACAUGUGUUG   29 Target Full Sequence	2.5	Sequence 5077 from Patent EP2985353	NA	coding protein	psRNATarget
HI406952.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||=||||||||||||||=||| targets:8   UCAUCUCAAUCCACAUGUGUUG   29 Target Full Sequence	2.5	Sequence 5077 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008677341.2	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||=|||||||||||||||||* targets:2915   UCAUCUCAAUCCACAUGUAUUA   2936 Target Full Sequence	2.0	PREDICTED: Zea mays cation/H(+) antiporter 15 (LOC103651657), mRNA	NA	coding protein	psRNATarget
XM_020550625.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||=|||||||||||||||||* targets:2899   UCAUCUCAAUCCACAUGUAUUA   2920 Target Full Sequence	2.0	PREDICTED: Zea mays cation/H(+) antiporter 15-like (LOC109944899), mRNA	NA	coding protein	psRNATarget
LQ235147.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*|||||||||||||||||||| targets:8   UGACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1142 from Patent EP2985353	NA	coding protein	psRNATarget
JB163478.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*|||||||||||||||||||| targets:8   UGACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1142 from Patent EP2559767	NA	coding protein	psRNATarget
HI403017.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*|||||||||||||||||||| targets:8   UGACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1142 from Patent EP2074227	NA	coding protein	psRNATarget
JB163411.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*|||||||||||||||||||| targets:8   UGACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1075 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235080.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*|||||||||||||||||||| targets:8   UGACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1075 from Patent EP2985353	NA	coding protein	psRNATarget
HI402950.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*|||||||||||||||||||| targets:8   UGACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1075 from Patent EP2074227	NA	coding protein	psRNATarget
JB163398.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   **|||||||||||||||||||| targets:8   AGACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1062 from Patent EP2559767	NA	coding protein	psRNATarget
HI402937.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   **|||||||||||||||||||| targets:8   AGACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1062 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235067.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   **|||||||||||||||||||| targets:8   AGACCUCAAUCCACAUGUAUUG   29 Target Full Sequence	0.0	Sequence 1062 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020543503.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:1818   UGACCUCAAUCCACAUGUGUUG   1839 Target Full Sequence	1.5	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020543504.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:1817   UGACCUCAAUCCACAUGUGUUG   1838 Target Full Sequence	1.5	PREDICTED: Zea mays putative RNA-binding protein ARP1 (LOC100216697), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020540612.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||=||||||||||| targets:1710   UAACCUCAAUUCACAUGUAUUG   1731 Target Full Sequence	1.5	PREDICTED: Zea mays membrane protein (LOC100381468), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU963259.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||=||||||||||| targets:861   UAACCUCAAUUCACAUGUAUUG   882 Target Full Sequence	1.5	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
EU955100.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||=||||||||||| targets:641   UAACCUCAAUUCACAUGUAUUG   662 Target Full Sequence	1.5	Zea mays clone 1509994 membrane protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001326691.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||=||||||||||| targets:641   UAACCUCAAUUCACAUGUAUUG   662 Target Full Sequence	1.5	Zea mays membrane protein (LOC100381468), mRNA	NA	coding protein	psRNATarget
LQ235359.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1354 from Patent EP2985353	NA	coding protein	psRNATarget
JB163723.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1387 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235392.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1387 from Patent EP2985353	NA	coding protein	psRNATarget
JB163780.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1444 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235393.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1388 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235506.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1501 from Patent EP2985353	NA	coding protein	psRNATarget
LQ235451.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1446 from Patent EP2985353	NA	coding protein	psRNATarget
JB163781.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1445 from Patent EP2559767	NA	coding protein	psRNATarget
JB163782.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1446 from Patent EP2559767	NA	coding protein	psRNATarget
HI403319.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1444 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235491.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UAACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1486 from Patent EP2985353	NA	coding protein	psRNATarget
HI403229.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1354 from Patent EP2074227	NA	coding protein	psRNATarget
HI403262.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1387 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235449.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1444 from Patent EP2985353	NA	coding protein	psRNATarget
JB163724.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1388 from Patent EP2559767	NA	coding protein	psRNATarget
HI403376.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1501 from Patent EP2074227	NA	coding protein	psRNATarget
HI403361.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UAACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1486 from Patent EP2074227	NA	coding protein	psRNATarget
HI403321.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1446 from Patent EP2074227	NA	coding protein	psRNATarget
HI403320.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1445 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235450.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1445 from Patent EP2985353	NA	coding protein	psRNATarget
JB163690.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1354 from Patent EP2559767	NA	coding protein	psRNATarget
HI403263.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1388 from Patent EP2074227	NA	coding protein	psRNATarget
JB163822.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UAACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1486 from Patent EP2559767	NA	coding protein	psRNATarget
JB163837.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:9   UGACCUCAAUCCACAUGUGUUG   30 Target Full Sequence	1.5	Sequence 1501 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235196.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||||*=||||||||||||||| targets:8   UCACCCUAAUCCACAUGUAUUG   29 Target Full Sequence	2.0	Sequence 1191 from Patent EP2985353	NA	coding protein	psRNATarget
HI403075.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:8   UGACCUCAAUCCACAUGUGUUG   29 Target Full Sequence	1.5	Sequence 1200 from Patent EP2074227	NA	coding protein	psRNATarget
HI403066.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||||*=||||||||||||||| targets:8   UCACCCUAAUCCACAUGUAUUG   29 Target Full Sequence	2.0	Sequence 1191 from Patent EP2074227	NA	coding protein	psRNATarget
JB163527.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||||*=||||||||||||||| targets:8   UCACCCUAAUCCACAUGUAUUG   29 Target Full Sequence	2.0	Sequence 1191 from Patent EP2559767	NA	coding protein	psRNATarget
JB163536.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:8   UGACCUCAAUCCACAUGUGUUG   29 Target Full Sequence	1.5	Sequence 1200 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235205.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||||||=||| targets:8   UGACCUCAAUCCACAUGUGUUG   29 Target Full Sequence	1.5	Sequence 1200 from Patent EP2985353	NA	coding protein	psRNATarget
NM_001112411.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*|=|||||||||=|||||||| targets:1627   UGAUCUCAAUCCAUAUGUAUUG   1648 Target Full Sequence	2.5	Zea mays uncharacterized LOC732794 (IDP506), mRNA	NA	coding protein	psRNATarget
AF277454.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*|=|||||||||=|||||||| targets:1627   UGAUCUCAAUCCAUAUGUAUUG   1648 Target Full Sequence	2.5	Zea mays UMP synthase (UMPS) mRNA, UMPS-1 allele, complete cds	NA	coding protein	psRNATarget
HI402966.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*|=|||||||=|||||||||| targets:8   UGAUCUCAAUCUACAUGUAUUG   29 Target Full Sequence	2.5	Sequence 1091 from Patent EP2074227	NA	coding protein	psRNATarget
JB163427.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*|=|||||||=|||||||||| targets:8   UGAUCUCAAUCUACAUGUAUUG   29 Target Full Sequence	2.5	Sequence 1091 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235096.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*|=|||||||=|||||||||| targets:8   UGAUCUCAAUCUACAUGUAUUG   29 Target Full Sequence	2.5	Sequence 1091 from Patent EP2985353	NA	coding protein	psRNATarget
LQ239375.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||*||||||| targets:23   UGACCUCAAUCCACUUGUAUUG   44 Target Full Sequence	1.5	Sequence 5370 from Patent EP2985353	NA	coding protein	psRNATarget
JB167706.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||*||||||| targets:23   UGACCUCAAUCCACUUGUAUUG   44 Target Full Sequence	1.5	Sequence 5370 from Patent EP2559767	NA	coding protein	psRNATarget
HI407245.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |*||||||||||||*||||||| targets:23   UGACCUCAAUCCACUUGUAUUG   44 Target Full Sequence	1.5	Sequence 5370 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235253.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||||**||||||||||||||| targets:8   UCACCAGAAUCCACAUGUAUUG   29 Target Full Sequence	2.0	Sequence 1248 from Patent EP2985353	NA	coding protein	psRNATarget
JB163584.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||||**||||||||||||||| targets:8   UCACCAGAAUCCACAUGUAUUG   29 Target Full Sequence	2.0	Sequence 1248 from Patent EP2559767	NA	coding protein	psRNATarget
HI403123.1	ncRNA:22   AGUGGAGUUAGGUGUACAUAAC   1   |||||**||||||||||||||| targets:8   UCACCAGAAUCCACAUGUAUUG   29 Target Full Sequence	2.0	Sequence 1248 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008654469.2	ncRNA:22   AG-UGGAGUUAGGUGUACAUAAC   1   ||-|||*|||||||=|||||||| targets:3042   UCUACCCCAAUCCAUAUGUAUUG   3064 Target Full Sequence	2.5	PREDICTED: Zea mays U-box domain-containing protein 35 (LOC103632728), mRNA	NA	coding protein	psRNATarget