Search result

BaseInfo

ncRNA ID osa-miR1869
Species Oryza sativa
Class miRNA
Genome position Chr4:21644852-21644989 [+]
Reference genome MSU7
Source miRBase
Length 24
Mature sequence(if miRNA) 11 - UGAGAACAAUAGGCAUGGGAGGUA - 34
Stem-loop(if miRNA) --     A         A  A            GUAUU      A ACAGG   A      GAC    AAU
  AAGGA CACCUGAGA CA UAGGCAUGGGAG     GGGAAA C     AAC UAUUGU   CCCU   U
  ||||| ||||||||| || ||||||||||||     |||||| |     ||| ||||||   ||||
  UUUCU GUGGAUUCU GU AUCCGUACCCUU     UCCUUU G     UUG GUAAUA   GGGA   U
UU     C         C  A            GUACC      C --GAG   -      -AA    AAU
Stem-loop sequence AAGGAACACCUGAGAACAAUAGGCAUGGGAGGUAUUGGGAAAACACAGGAACAUAUUGUGACCCCUAAUUUUAAAGGGAAAUAAUGGUUGAGGCUUUCCUCCAUGUUCCCAUGCCUAAUGCUCUUAGGUGCUCUUUUU

Reference

1 PMID:18687877
"A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains";
Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C;
Genome Res. 18:1456-1465(2008).