Search result

BaseInfo

ncRNA ID	novel_zma_miR896
Species	Zea mays
Class	miRNA
Genome position	Chr2:42231288-42231349 [-]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	39 - GGGAUUGGAGGAGAUUGAGGUGGA - 62
Stem-loop(if miRNA)	--    U    G    U     U      GA   GGGA UGGA GAGA UGAGG GGAAAU  A   |||| |||| |||| ||||| ||||||   CCCU ACUU CUCU ACUUC CUUUUA  C AG    U    A    U     U      AU
Stem-loop sequence	GGGAUUGGAGGAGAUUGAGGUGGAAAUGAACUAAUUUUCUCUUCAUUCUCAUUCAUUCCCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ235532.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |||*|||||||||||||=|||||| targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	1.5	Sequence 1527 from Patent EP2985353	NA	coding protein	psRNATarget
JB163863.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |||*|||||||||||||=|||||| targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	1.5	Sequence 1527 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235365.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |||*|||||||||||||=|||||| targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	1.5	Sequence 1360 from Patent EP2985353	NA	coding protein	psRNATarget
HI403402.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |||*|||||||||||||=|||||| targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	1.5	Sequence 1527 from Patent EP2074227	NA	coding protein	psRNATarget
HI403235.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |||*|||||||||||||=|||||| targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	1.5	Sequence 1360 from Patent EP2074227	NA	coding protein	psRNATarget
JB163696.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |||*|||||||||||||=|||||| targets:67   UCCUCCUCAAUCUCCUCUAAUCCC   90 Target Full Sequence	1.5	Sequence 1360 from Patent EP2559767	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |=||||||||||*||||||||||= targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98 Target Full Sequence	2.5	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |=||||||||||*||||||||||= targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64 Target Full Sequence	2.5	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
XM_008670635.2	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   ||=||||*|||||||||||||||* targets:59   UCUACCUAAAUCUCCUCCAAUCCA   82 Target Full Sequence	2.0	PREDICTED: Zea mays ABC transporter I family member 1 (LOC103645914), mRNA	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |||*||||||||*||||||||||= targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |||*||||||||*||||||||||= targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |||*||||||||*||||||||||= targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |||==*|||||||||||||||||* targets:1002   UCCGUAUCAAUCUCCUCCAAUCCA   1025 Target Full Sequence	2.0	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |=|*||||||||*||||||||||= targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	2.5	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
HI403355.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |=|*||||||||*||||||||||= targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	2.5	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
JB163816.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   |=|*||||||||*||||||||||= targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	2.5	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AGGUGGAGUUAGAGGAGGUUAGGG   1   ||=*=|||||||*||||||||||= targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget