ncRNA ID | osa-miR2118a |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr4:21642923-21643101 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 22 |
Mature sequence(if miRNA) | 28 - UUCUCGAUGCCUCCCAUUCCUA - 49 |
Stem-loop(if miRNA) |
G           AAAGA    C        UA      C     -A   A           --    UCU   CAUCUA      CC UCC     G  GGAAGAGGAAG     GAGG UCCAAGAG  GUAGGA UGGGA  CAU UGAGAAAGCAU  GAGC   AUC      UCCAUC  C   CAUUC C  |||||||||||     |||| ||||||||  |||||| |||||  ||| |||||||||||  ||||   |||      ||||||  |   |||||  CCUUCUCCUUC     CUUC AGGUUCUU  UAUCCU ACCCU  GUA GCUCUUUUGUA  CUCG   UAG      AGGUGG  G   GUAAG U -           -----    A        GC      U     CC   -           UU    CUU   ------      AC -UU     A |
Stem-loop sequence | GGGAAGAGGAAGAAAGAGAGGCUCCAAGAGUAGUAGGACUGGGAACAUAUGAGAAAGCAUGAGCUCUAUCCAUCUAUCCAUCCCCUCCCAUUCGCUAGAAUGUUGCAGGUGGAGAUUUCGCUCUUAUGUUUUCUCGAUGCCUCCCAUUCCUAUCGUUCUUGGAACUUCCUUCCUCUUCC |
1 | PMID:19584097
"Clusters and superclusters of phased small RNAs in the developing inflorescence of rice"; Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH; Genome Res. 19:1429-1440(2009). |