Search result

BaseInfo

ncRNA ID osa-miR2118a
Species Oryza sativa
Class miRNA
Genome position Chr4:21642923-21643101 [-]
Reference genome MSU7
Source miRBase
Length 22
Mature sequence(if miRNA) 28 - UUCUCGAUGCCUCCCAUUCCUA - 49
Stem-loop(if miRNA) G           AAAGA    C        UA      C     -A   A           --    UCU   CAUCUA      CC UCC     G
 GGAAGAGGAAG     GAGG UCCAAGAG  GUAGGA UGGGA  CAU UGAGAAAGCAU  GAGC   AUC      UCCAUC  C   CAUUC C
 |||||||||||     |||| ||||||||  |||||| |||||  ||| |||||||||||  ||||   |||      ||||||  |   |||||
 CCUUCUCCUUC     CUUC AGGUUCUU  UAUCCU ACCCU  GUA GCUCUUUUGUA  CUCG   UAG      AGGUGG  G   GUAAG U
-           -----    A        GC      U     CC   -           UU    CUU   ------      AC -UU     A
Stem-loop sequence GGGAAGAGGAAGAAAGAGAGGCUCCAAGAGUAGUAGGACUGGGAACAUAUGAGAAAGCAUGAGCUCUAUCCAUCUAUCCAUCCCCUCCCAUUCGCUAGAAUGUUGCAGGUGGAGAUUUCGCUCUUAUGUUUUCUCGAUGCCUCCCAUUCCUAUCGUUCUUGGAACUUCCUUCCUCUUCC

Reference

1 PMID:19584097
"Clusters and superclusters of phased small RNAs in the developing inflorescence of rice";
Johnson C, Kasprzewska A, Tennessen K, Fernandes J, Nan GL, Walbot V, Sundaresan V, Vance V, Bowman LH;
Genome Res. 19:1429-1440(2009).