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BaseInfo

ncRNA ID novel_zma_miR889
Species Zea mays
Class miRNA
Genome position Chr2:75238445-75238665 [-]
Reference genome RefGen_v4
Source SRR2089710
Length 24
Mature sequence(if miRNA) 198 - ACCUAUGGAUUGGAUGGGAUUGGA - 221
Stem-loop(if miRNA) --    -          U             AU  A      AU       AGUUGG    UA   UCA   -    -- ACAUGGAUUGAGAGCUAACCGAACAAGCCCUUAGGU
  ACCU AUGGAUUGGA GGGAUUGGAAAAA  UG GAAGAA  UUGACUU      GAUU  AAC   CUC AAUC  C                                    G
  |||| |||||||||| |||||||||||||  || ||||||  |||||||      ||||  |||   ||| ||||  |
  UGGA UACCUAGCCU CCCUAAUUUUUUU  AC CUUCUU  AACUGAA      CUAA  UUG   GAU GGUU  G                                    G
CA    A          U             --  A      --       AGAUAA    UC   ---   A    AA GGAGGUUAGGUAUACCUAAAACUACUUUCGCUUUCU
Stem-loop sequence ACCUAUGGAUUGGAUGGGAUUGGAAAAAAUUGAGAAGAAAUUUGACUUAGUUGGGAUUUAAACUCACUCAAUCCACAUGGAUUGAGAGCUAACCGAACAAGCCCUUAGGUGGUCUUUCGCUUUCAUCAAAAUCCAUAUGGAUUGGAGGGAAUUGGAUAGGUUCUAAUCAAUAGAAAGUCAAUUCUUCACAUUUUUUUAAUCCCUUCCGAUCCAUAAGGUAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EZ113717.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  ||||||||||||||||||||||||
targets:50   UCCAAUCCCAUCCAAUCCAUAGGU   73

0.0 TSA: Zea mays contig49378, mRNA sequence NA coding protein psRNATarget
HI410160.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||=||||||||||||||
targets:76   UCCAAUCCCGUCCAAUCCAUAGGU   99

1.0 Sequence 8285 from Patent EP2074227 NA coding protein psRNATarget
LQ242290.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||=||||||||||||||
targets:76   UCCAAUCCCGUCCAAUCCAUAGGU   99

1.0 Sequence 8285 from Patent EP2985353 NA coding protein psRNATarget
JB170621.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||=||||||||||||||
targets:76   UCCAAUCCCGUCCAAUCCAUAGGU   99

1.0 Sequence 8285 from Patent EP2559767 NA coding protein psRNATarget
LQ238055.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  ||||||||||||||||||||=|||
targets:76   UCCAAUCCCAUCCAAUCCAUGGGU   99

1.5 Sequence 4050 from Patent EP2985353 NA coding protein psRNATarget
HI405925.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  ||||||||||||||||||||=|||
targets:76   UCCAAUCCCAUCCAAUCCAUGGGU   99

1.5 Sequence 4050 from Patent EP2074227 NA coding protein psRNATarget
JB166386.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  ||||||||||||||||||||=|||
targets:76   UCCAAUCCCAUCCAAUCCAUGGGU   99

1.5 Sequence 4050 from Patent EP2559767 NA coding protein psRNATarget
LQ235423.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  ||||||||||||||||||||=|||
targets:78   UCCAAUCCCAUCCAAUCCAUGGGU   101

1.5 Sequence 1418 from Patent EP2985353 NA coding protein psRNATarget
JB163754.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  ||||||||||||||||||||=|||
targets:78   UCCAAUCCCAUCCAAUCCAUGGGU   101

1.5 Sequence 1418 from Patent EP2559767 NA coding protein psRNATarget
HI403293.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  ||||||||||||||||||||=|||
targets:78   UCCAAUCCCAUCCAAUCCAUGGGU   101

1.5 Sequence 1418 from Patent EP2074227 NA coding protein psRNATarget
BT066004.2
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||=||||||||||||=|||
targets:46   UCCAAUCUCAUCCAAUCCAUGGGU   69

2.5 Zea mays full-length cDNA clone ZM_BFb0144M24 mRNA, complete cds NA coding protein psRNATarget
LQ237953.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:92   UCCAAUCCCAUCCAAUCCAUAUGU   115

1.5 Sequence 3948 from Patent EP2985353 NA coding protein psRNATarget
HI405823.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:92   UCCAAUCCCAUCCAAUCCAUAUGU   115

1.5 Sequence 3948 from Patent EP2074227 NA coding protein psRNATarget
JB166284.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:92   UCCAAUCCCAUCCAAUCCAUAUGU   115

1.5 Sequence 3948 from Patent EP2559767 NA coding protein psRNATarget
XM_020550022.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:3686   UCCAAUCCCAUCCAAUCCAUAUGU   3709

1.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X8, mRNA NA coding protein psRNATarget
XM_020550024.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:3710   UCCAAUCCCAUCCAAUCCAUAUGU   3733

1.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X10, mRNA NA coding protein psRNATarget
XM_020550021.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:3764   UCCAAUCCCAUCCAAUCCAUAUGU   3787

1.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X7, mRNA NA coding protein psRNATarget
XM_020550020.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:3758   UCCAAUCCCAUCCAAUCCAUAUGU   3781

1.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X6, mRNA NA coding protein psRNATarget
XM_020550017.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:3766   UCCAAUCCCAUCCAAUCCAUAUGU   3789

1.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020550019.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:3753   UCCAAUCCCAUCCAAUCCAUAUGU   3776

1.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020550016.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:3828   UCCAAUCCCAUCCAAUCCAUAUGU   3851

1.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X2, mRNA NA coding protein psRNATarget
XM_020550018.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:4152   UCCAAUCCCAUCCAAUCCAUAUGU   4175

1.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020550015.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||||||||||||||||*||
targets:4248   UCCAAUCCCAUCCAAUCCAUAUGU   4271

1.5 PREDICTED: Zea mays serine/threonine-protein kinase prpf4B-like (LOC103650321), transcript variant X1, mRNA NA coding protein psRNATarget
LQ237970.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||=|||||||||||||*||
targets:92   UCCAAUCUCAUCCAAUCCAUAUGU   115

2.5 Sequence 3965 from Patent EP2985353 NA coding protein psRNATarget
JB166301.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||=|||||||||||||*||
targets:92   UCCAAUCUCAUCCAAUCCAUAUGU   115

2.5 Sequence 3965 from Patent EP2559767 NA coding protein psRNATarget
HI405840.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||=|||||||||||||*||
targets:92   UCCAAUCUCAUCCAAUCCAUAUGU   115

2.5 Sequence 3965 from Patent EP2074227 NA coding protein psRNATarget
EZ070047.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||=|||||||||||||*||
targets:33   UCCAAUCUCAUCCAAUCCAUAUGU   56

2.5 TSA: Zea mays contig05683, mRNA sequence NA coding protein psRNATarget
JB166283.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |=|||||||||||||||||||*||
targets:92   UUCAAUCCCAUCCAAUCCAUAUGU   115

1.5 Sequence 3947 from Patent EP2559767 NA coding protein psRNATarget
HI405822.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |=|||||||||||||||||||*||
targets:92   UUCAAUCCCAUCCAAUCCAUAUGU   115

1.5 Sequence 3947 from Patent EP2074227 NA coding protein psRNATarget
LQ237952.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |=|||||||||||||||||||*||
targets:92   UUCAAUCCCAUCCAAUCCAUAUGU   115

1.5 Sequence 3947 from Patent EP2985353 NA coding protein psRNATarget
BT040208.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  ||||||||=|*|||||||||||||
targets:1367   UCCAAUCCUACCCAAUCCAUAGGU   1390

2.0 Zea mays full-length cDNA clone ZM_BFc0071O17 mRNA, complete cds NA coding protein psRNATarget
XM_020543938.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||=|||||||||||||*||
targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X5, mRNA NA coding protein psRNATarget
XM_020543937.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||=|||||||||||||*||
targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X4, mRNA NA coding protein psRNATarget
XM_020543936.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||=|||||||||||||*||
targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X3, mRNA NA coding protein psRNATarget
XM_020543935.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |||||||=|||||||||||||*||
targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311

2.5 PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X2, mRNA NA coding protein psRNATarget
JB166293.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  ||=||||=|||||||||||||*||
targets:92   UCUAAUCUCAUCCAAUCCAUAUGU   115

2.5 Sequence 3957 from Patent EP2559767 NA coding protein psRNATarget
LQ237962.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  ||=||||=|||||||||||||*||
targets:92   UCUAAUCUCAUCCAAUCCAUAUGU   115

2.5 Sequence 3957 from Patent EP2985353 NA coding protein psRNATarget
HI405832.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  ||=||||=|||||||||||||*||
targets:92   UCUAAUCUCAUCCAAUCCAUAUGU   115

2.5 Sequence 3957 from Patent EP2074227 NA coding protein psRNATarget
EU946263.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |=|||||=|||||||||||||*||
targets:596   UUCAAUCUCAUCCAAUCCAUAUGU   619

2.5 Zea mays clone 302506 mRNA sequence NA coding protein psRNATarget
NM_001291617.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  ||=||||=|||||||||||||*||
targets:769   UCUAAUCUCAUCCAAUCCAUAUGU   792

2.5 Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA NA coding protein psRNATarget
BT068211.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  ||=||||=|||||||||||||*||
targets:769   UCUAAUCUCAUCCAAUCCAUAUGU   792

2.5 Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds NA coding protein psRNATarget
EU963259.1
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  ||=||||=|||||||||||||*||
targets:1012   UCUAAUCUCAUCCAAUCCAUAUGU   1035

2.5 Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds NA coding protein psRNATarget
XM_008667530.2
ncRNA:24   AGGUUAGGGUAGGUUAGGUAUCCA   1
  |=|||||=|||||||||||||*||
targets:2816   UUCAAUCUCAUCCAAUCCAUAUGU   2839

2.5 PREDICTED: Zea mays probable acyl-activating enzyme 16, chloroplastic (LOC103644323), mRNA NA coding protein psRNATarget
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