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BaseInfo

ncRNA ID novel_zma_miR883
Species Zea mays
Class miRNA
Genome position Chr2:121013647-121013820 [-]
Reference genome RefGen_v4
Source SRR2089710
Length 21
Mature sequence(if miRNA) 1 - ACGGGCUGUCCGGUGCACACC - 21
Stem-loop(if miRNA) --  CA        U     -  G   -----CAAA    CU  -    GGUA       -        AAUGUA  GAAUU  A  A     C
  UG  CACCGGAC GUCCG GU UGC         UUUG  CA AACU    UGGCUUC AACUCUGG      GA     UC UA GCUUU C
  ||  |||||||| ||||| || |||         ||||  || ||||    ||||||| ||||||||      ||     || || |||||
  AC  GUGGCCUG CGGGC CG ACG         AAAC  GU UUGA    AUCGAGG UUGAGGCU      CU     AG AU UGAAA A
CC  AC        U     A  A   AACAGCAUA    CG  A    --AA       C        --AAAA  --ACU  A  A     A
Stem-loop sequence UGCACACCGGACUGUCCGGUGUGCCAAAUUUGCUCAAACUGGUAUGGCUUCAACUCUGGAAUGUAGAGAAUUUCAUAAGCUUUCCAAAAAGUAUAAGAUCAUCAAAAUCGGAGUUCGGAGCUAAAAGUUAUGGCCAAAAUACGACAAGCAAGCACGGGCUGUCCGGUGCACACC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU950973.1
ncRNA:21   CCACACGUGGCCUGUCGGGCA   1
  ||||||||||||||||=|||*
targets:183   GGUGUGCACCGGACAGUCCGG   203

2.5 Zea mays clone 677173 mRNA sequence NA coding protein psRNATarget