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BaseInfo

ncRNA ID	novel_zma_miR882
Species	Zea mays
Class	miRNA
Genome position	Chr2:32535900-32535977 [+]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089715
Length	24
Mature sequence(if miRNA)	1 - CCAUGUGGAUUGGAUGAGAUUGGA - 24
Stem-loop(if miRNA)	-            GA  A    GGAAAAAAUGAA      UG U  CCAUGUGGAUUG  UG GAUU            AGAUUU  A U  ||||||||||||  || ||||            ||||||  | U  GGUACACUUAAC  AC CUAA            UUUAGA  U G A            UC  -    -----------A      GU U
Stem-loop sequence	CCAUGUGGAUUGGAUGAGAUUGGAAAAAAUGAAAGAUUUUGAUUUGUUUGAGAUUUAAAUCCACUCAAUUCACAUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ241774.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||||||||||||||||||| targets:97   UCCAAUCUCAUCCAAUCCACAUGG   120 Target Full Sequence	0.0	Sequence 7769 from Patent EP2985353	NA	coding protein	psRNATarget
JB170105.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||||||||||||||||||| targets:97   UCCAAUCUCAUCCAAUCCACAUGG   120 Target Full Sequence	0.0	Sequence 7769 from Patent EP2559767	NA	coding protein	psRNATarget
HI409644.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||||||||||||||||||| targets:97   UCCAAUCUCAUCCAAUCCACAUGG   120 Target Full Sequence	0.0	Sequence 7769 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001158639.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=||||||||||||||||||||| targets:1286   UCUAAUCUCAUCCAAUCCACAUGG   1309 Target Full Sequence	0.0	Zea mays coiled-coil-helix-coiled-coil-helix domain-containing protein 4 (LOC100285749), mRNA	NA	coding protein	psRNATarget
EU973712.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=||||||||||||||||||||| targets:1286   UCUAAUCUCAUCCAAUCCACAUGG   1309 Target Full Sequence	0.0	Zea mays clone 407236 coiled-coil-helix-coiled-coil-helix domain-containing protein 4 mRNA, complete cds	NA	coding protein	psRNATarget
BT083591.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=||||||||||||||||||||| targets:1182   UCUAAUCUCAUCCAAUCCACAUGG   1205 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0016I19 mRNA, complete cds	NA	coding protein	psRNATarget
BT041309.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=||||||||||||||||||||| targets:180   UCUAAUCUCAUCCAAUCCACAUGG   203 Target Full Sequence	0.0	Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds	NA	coding protein	psRNATarget
BT041309.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *=||||*||||||||||||||||| targets:107   CUCAAUAUCAUCCAAUCCACAUGG   130 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0380J08 mRNA, complete cds	NA	coding protein	psRNATarget
JB167489.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||||||||=||||||| targets:73   UCCAAUCUCAUCCAAUUCACAUGG   96 Target Full Sequence	1.5	Sequence 5153 from Patent EP2559767	NA	coding protein	psRNATarget
HI407028.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||||||||=||||||| targets:73   UCCAAUCUCAUCCAAUUCACAUGG   96 Target Full Sequence	1.5	Sequence 5153 from Patent EP2074227	NA	coding protein	psRNATarget
LQ239158.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||||||||=||||||| targets:73   UCCAAUCUCAUCCAAUUCACAUGG   96 Target Full Sequence	1.5	Sequence 5153 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020543935.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||||||||||||||=|||* targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020543936.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||||||||||||||=|||* targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020543937.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||||||||||||||=|||* targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_020543938.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||||||||||||||=|||* targets:288   UCCAAUCUCAUCCAAUCCAUAUGU   311 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At5g39710 (LOC103638071), transcript variant X5, mRNA	NA	coding protein	psRNATarget
EZ070047.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||||||||||||||=|||* targets:33   UCCAAUCUCAUCCAAUCCAUAUGU   56 Target Full Sequence	2.5	TSA: Zea mays contig05683, mRNA sequence	NA	coding protein	psRNATarget
JB163504.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||||||=|||||||||||* targets:100   UCCAAUCUCAUUCAAUCCACAUGA   123 Target Full Sequence	2.5	Sequence 1168 from Patent EP2559767	NA	coding protein	psRNATarget
HI403043.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||||||=|||||||||||* targets:100   UCCAAUCUCAUUCAAUCCACAUGA   123 Target Full Sequence	2.5	Sequence 1168 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235173.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||||||=|||||||||||* targets:100   UCCAAUCUCAUUCAAUCCACAUGA   123 Target Full Sequence	2.5	Sequence 1168 from Patent EP2985353	NA	coding protein	psRNATarget
JB166301.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||||||||||||||=|||* targets:92   UCCAAUCUCAUCCAAUCCAUAUGU   115 Target Full Sequence	2.5	Sequence 3965 from Patent EP2559767	NA	coding protein	psRNATarget
HI405840.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||||||||||||||=|||* targets:92   UCCAAUCUCAUCCAAUCCAUAUGU   115 Target Full Sequence	2.5	Sequence 3965 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237970.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||||||||||||||=|||* targets:92   UCCAAUCUCAUCCAAUCCAUAUGU   115 Target Full Sequence	2.5	Sequence 3965 from Patent EP2985353	NA	coding protein	psRNATarget
XM_020539455.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||*|||||||||||||||| targets:279   UCCAAUCCCAUCCAAUCCACAUGG   302 Target Full Sequence	1.0	PREDICTED: Zea mays Putative ARM repeat-containing protein containing family protein (LOC103629927), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020551501.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||*|||||||||||||||| targets:1290   UCCAAUCCCAUCCAAUCCACAUGG   1313 Target Full Sequence	1.0	PREDICTED: Zea mays RNA-binding (RRM/RBD/RNP motifs) family protein (cl12347_2a), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001138165.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*||||||||||||| targets:1218   UCCAAUCUCACCCAAUCCACAUGG   1241 Target Full Sequence	1.0	Zea mays B3 domain-containing protein (LOC100192994), mRNA	NA	coding protein	psRNATarget
BT035134.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*||||||||||||| targets:1218   UCCAAUCUCACCCAAUCCACAUGG   1241 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0041I21 mRNA, complete cds	NA	coding protein	psRNATarget
XM_008647186.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*||||||||||||| targets:1056   UCCAAUCUCACCCAAUCCACAUGG   1079 Target Full Sequence	1.0	PREDICTED: Zea mays B3 domain-containing protein (LOC100192994), transcript variant X1, mRNA	NA	coding protein	psRNATarget
BT087300.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*||||||||||||| targets:1023   UCCAAUCUCACCCAAUCCACAUGG   1046 Target Full Sequence	1.0	Zea mays full-length cDNA clone ZM_BFb0032O11 mRNA, complete cds	NA	coding protein	psRNATarget
HI410114.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||*|||||||||||||||| targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99 Target Full Sequence	1.0	Sequence 8239 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242244.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||*|||||||||||||||| targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99 Target Full Sequence	1.0	Sequence 8239 from Patent EP2985353	NA	coding protein	psRNATarget
JB170575.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||*|||||||||||||||| targets:76   UCCAAUCCCAUCCAAUCCACAUGG   99 Target Full Sequence	1.0	Sequence 8239 from Patent EP2559767	NA	coding protein	psRNATarget
XM_008667530.2	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |=|||||||||||||||||=|||* targets:2816   UUCAAUCUCAUCCAAUCCAUAUGU   2839 Target Full Sequence	2.5	PREDICTED: Zea mays probable acyl-activating enzyme 16, chloroplastic (LOC103644323), mRNA	NA	coding protein	psRNATarget
EU963259.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=||||||||||||||||=|||* targets:1012   UCUAAUCUCAUCCAAUCCAUAUGU   1035 Target Full Sequence	2.5	Zea mays clone 259966 enhancer of rudimentary mRNA, complete cds	NA	coding protein	psRNATarget
BT068211.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=||||||||||||||||=|||* targets:769   UCUAAUCUCAUCCAAUCCAUAUGU   792 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0077D08 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001291617.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=||||||||||||||||=|||* targets:769   UCUAAUCUCAUCCAAUCCAUAUGU   792 Target Full Sequence	2.5	Zea mays enhancer of rudimentary-like protein (LOC100383755), mRNA	NA	coding protein	psRNATarget
EU946263.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |=|||||||||||||||||=|||* targets:596   UUCAAUCUCAUCCAAUCCAUAUGU   619 Target Full Sequence	2.5	Zea mays clone 302506 mRNA sequence	NA	coding protein	psRNATarget
HI405832.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=||||||||||||||||=|||* targets:92   UCUAAUCUCAUCCAAUCCAUAUGU   115 Target Full Sequence	2.5	Sequence 3957 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237962.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=||||||||||||||||=|||* targets:92   UCUAAUCUCAUCCAAUCCAUAUGU   115 Target Full Sequence	2.5	Sequence 3957 from Patent EP2985353	NA	coding protein	psRNATarget
JB166293.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=||||||||||||||||=|||* targets:92   UCUAAUCUCAUCCAAUCCAUAUGU   115 Target Full Sequence	2.5	Sequence 3957 from Patent EP2559767	NA	coding protein	psRNATarget
XM_020549703.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:2350   UCCAAUCUCACUCAAUCCACAUGG   2373 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549704.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:2290   UCCAAUCUCACUCAAUCCACAUGG   2313 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674604.2	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:2283   UCCAAUCUCACUCAAUCCACAUGG   2306 Target Full Sequence	2.5	PREDICTED: Zea mays protein kinase domain containing protein (LOC100281444), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EU956718.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:2155   UCCAAUCUCACUCAAUCCACAUGG   2178 Target Full Sequence	2.5	Zea mays clone 1571610 protein kinase domain containing protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001154362.2	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:2154   UCCAAUCUCACUCAAUCCACAUGG   2177 Target Full Sequence	2.5	Zea mays protein kinase domain containing protein (LOC100281444), mRNA	NA	coding protein	psRNATarget
BT063416.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:2082   UCCAAUCUCACUCAAUCCACAUGG   2105 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0061L20 mRNA, complete cds	NA	coding protein	psRNATarget
EU974368.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |=||||*||||||||||||||||| targets:1246   UUCAAUAUCAUCCAAUCCACAUGG   1269 Target Full Sequence	1.0	Zea mays clone 447232 hypothetical protein mRNA, complete cds	NA	coding protein	psRNATarget
NM_001326531.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |==|||=|||||=||||||||||| targets:1433   UUUAAUUUCAUCUAAUCCACAUGG   1456 Target Full Sequence	2.5	Zea mays D-glycerate 3-kinase, chloroplastic-like (LOC103651345), mRNA	NA	coding protein	psRNATarget
AY104584.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=|||||||||*||||||||||| targets:1124   UCUAAUCUCAUCAAAUCCACAUGG   1147 Target Full Sequence	1.5	Zea mays PCO129366 mRNA sequence	NA	coding protein	psRNATarget
EU948773.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |==|||=|||||=||||||||||| targets:1202   UUUAAUUUCAUCUAAUCCACAUGG   1225 Target Full Sequence	2.5	Zea mays clone 384607 mRNA sequence	NA	coding protein	psRNATarget
NM_001148796.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=|||||||||*||||||||||| targets:1088   UCUAAUCUCAUCAAAUCCACAUGG   1111 Target Full Sequence	1.5	Zea mays uncharacterized LOC100274437 (pco129366(222)), mRNA	NA	coding protein	psRNATarget
BT043046.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=|||||||||*||||||||||| targets:1088   UCUAAUCUCAUCAAAUCCACAUGG   1111 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0087D17 mRNA, complete cds	NA	coding protein	psRNATarget
EU958201.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |==|||=|||||=||||||||||| targets:972   UUUAAUUUCAUCUAAUCCACAUGG   995 Target Full Sequence	2.5	Zea mays clone 1678209 mRNA sequence	NA	coding protein	psRNATarget
BT062183.2	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:248   UCCAAUCUCACUCAAUCCACAUGG   271 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0224O15 mRNA, complete cds	NA	coding protein	psRNATarget
BT086633.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:457   UCCAAUCUCACUCAAUCCACAUGG   480 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFa0068P14 mRNA, complete cds	NA	coding protein	psRNATarget
JB166339.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:93   UCCAAUCUCACUCAAUCCACAUGG   116 Target Full Sequence	2.5	Sequence 4003 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238008.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:93   UCCAAUCUCACUCAAUCCACAUGG   116 Target Full Sequence	2.5	Sequence 4003 from Patent EP2985353	NA	coding protein	psRNATarget
HI405878.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:93   UCCAAUCUCACUCAAUCCACAUGG   116 Target Full Sequence	2.5	Sequence 4003 from Patent EP2074227	NA	coding protein	psRNATarget
JB166338.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:89   UCCAAUCUCACUCAAUCCACAUGG   112 Target Full Sequence	2.5	Sequence 4002 from Patent EP2559767	NA	coding protein	psRNATarget
HI405877.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:89   UCCAAUCUCACUCAAUCCACAUGG   112 Target Full Sequence	2.5	Sequence 4002 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238007.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:89   UCCAAUCUCACUCAAUCCACAUGG   112 Target Full Sequence	2.5	Sequence 4002 from Patent EP2985353	NA	coding protein	psRNATarget
JB163763.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||*||||||||||||=||| targets:86   UCCAAUCCCAUCCAAUCCACGUGG   109 Target Full Sequence	2.5	Sequence 1427 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235432.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||*||||||||||||=||| targets:86   UCCAAUCCCAUCCAAUCCACGUGG   109 Target Full Sequence	2.5	Sequence 1427 from Patent EP2985353	NA	coding protein	psRNATarget
HI403302.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||*||||||||||||=||| targets:86   UCCAAUCCCAUCCAAUCCACGUGG   109 Target Full Sequence	2.5	Sequence 1427 from Patent EP2074227	NA	coding protein	psRNATarget
JB166354.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:81   UCCAAUCUCACUCAAUCCACAUGG   104 Target Full Sequence	2.5	Sequence 4018 from Patent EP2559767	NA	coding protein	psRNATarget
HI405893.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:81   UCCAAUCUCACUCAAUCCACAUGG   104 Target Full Sequence	2.5	Sequence 4018 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238023.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:81   UCCAAUCUCACUCAAUCCACAUGG   104 Target Full Sequence	2.5	Sequence 4018 from Patent EP2985353	NA	coding protein	psRNATarget
EZ092645.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||||||||||*=|||||||||||| targets:18   UCCAAUCUCACUCAAUCCACAUGG   41 Target Full Sequence	2.5	TSA: Zea mays contig28294, mRNA sequence	NA	coding protein	psRNATarget
XM_008674543.2	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||*|||||||||||||||* targets:2499   UCCAAUCCCAUCCAAUCCACAUGA   2522 Target Full Sequence	2.0	PREDICTED: Zea mays Peptidase M28 family protein (cl4954_1), transcript variant X1, mRNA	NA	coding protein	psRNATarget
EU957741.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *|||||||||*||||||||||||| targets:1401   CCCAAUCUCACCCAAUCCACAUGG   1424 Target Full Sequence	1.0	Zea mays clone 1613489 mRNA sequence	NA	coding protein	psRNATarget
EU957033.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *|||||||||*||||||||||||| targets:1400   CCCAAUCUCACCCAAUCCACAUGG   1423 Target Full Sequence	1.0	Zea mays clone 1581039 mRNA sequence	NA	coding protein	psRNATarget
AY105812.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |==||||||||||||||||=|||* targets:1037   UUUAAUCUCAUCCAAUCCAUAUGA   1060 Target Full Sequence	2.5	Zea mays PCO140232 mRNA sequence	NA	coding protein	psRNATarget
EU945995.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *||||||*|||||||||||||||| targets:555   CCCAAUCCCAUCCAAUCCACAUGG   578 Target Full Sequence	1.0	Zea mays clone 293035 mRNA sequence	NA	coding protein	psRNATarget
XM_008674375.2	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=|||||||*=|||||||||||| targets:3440   UCUAAUCUCACUCAAUCCACAUGG   3463 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008674376.2	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=|||||||*=|||||||||||| targets:3409   UCUAAUCUCACUCAAUCCACAUGG   3432 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674377.2	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=|||||||*=|||||||||||| targets:3396   UCUAAUCUCACUCAAUCCACAUGG   3419 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100276614 (LOC100276614), transcript variant X3, mRNA	NA	coding protein	psRNATarget
EZ081225.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   ||=|||||||*|=||||||||||| targets:52   UCUAAUCUCACCUAAUCCACAUGG   75 Target Full Sequence	2.5	TSA: Zea mays contig16865, mRNA sequence	NA	coding protein	psRNATarget
EZ077834.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |==||*|||||||||||||||||| targets:48   UUUAAACUCAUCCAAUCCACAUGG   71 Target Full Sequence	1.0	TSA: Zea mays contig13473, mRNA sequence	NA	coding protein	psRNATarget
JB167116.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *=||||*||||||||||||||||| targets:144   CUCAAUAUCAUCCAAUCCACAUGG   167 Target Full Sequence	1.0	Sequence 4780 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238785.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *=||||*||||||||||||||||| targets:144   CUCAAUAUCAUCCAAUCCACAUGG   167 Target Full Sequence	1.0	Sequence 4780 from Patent EP2985353	NA	coding protein	psRNATarget
HI406655.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *=||||*||||||||||||||||| targets:144   CUCAAUAUCAUCCAAUCCACAUGG   167 Target Full Sequence	1.0	Sequence 4780 from Patent EP2074227	NA	coding protein	psRNATarget
XM_008678388.2	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||*||*||||||||||||| targets:1829   UCCAAUCCCACCCAAUCCACAUGG   1852 Target Full Sequence	2.0	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008678390.2	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||*||*||||||||||||| targets:1813   UCCAAUCCCACCCAAUCCACAUGG   1836 Target Full Sequence	2.0	PREDICTED: Zea mays RNA-binding motif protein, X-linked 2 (LOC100282627), transcript variant X2, mRNA	NA	coding protein	psRNATarget
LQ241402.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||*||*||||||||||||| targets:76   UCCAAUCCCACCCAAUCCACAUGG   99 Target Full Sequence	2.0	Sequence 7397 from Patent EP2985353	NA	coding protein	psRNATarget
JB169733.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||*||*||||||||||||| targets:76   UCCAAUCCCACCCAAUCCACAUGG   99 Target Full Sequence	2.0	Sequence 7397 from Patent EP2559767	NA	coding protein	psRNATarget
HI409272.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   |||||||*||*||||||||||||| targets:76   UCCAAUCCCACCCAAUCCACAUGG   99 Target Full Sequence	2.0	Sequence 7397 from Patent EP2074227	NA	coding protein	psRNATarget
XM_020542631.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *=||||*||||||||||||=|||| targets:6360   CUCAAUAUCAUCCAAUCCAUAUGG   6383 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_020542629.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *=||||*||||||||||||=|||| targets:5945   CUCAAUAUCAUCCAAUCCAUAUGG   5968 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020542630.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *=||||*||||||||||||=|||| targets:5883   CUCAAUAUCAUCCAAUCCAUAUGG   5906 Target Full Sequence	2.5	PREDICTED: Zea mays protein Rf1, mitochondrial-like (LOC103635420), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020545025.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *=|||||||*|||||||||=|||| targets:334   CUCAAUCUCCUCCAAUCCAUAUGG   357 Target Full Sequence	2.5	PREDICTED: Zea mays Phosphoglycerate mutase-like protein AT74H (LOC100280403), transcript variant X6, mRNA	NA	coding protein	psRNATarget
XM_008660174.2	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *=|||||*|||||||||=|||||| targets:3594   CUCAAUCCCAUCCAAUCUACAUGG   3617 Target Full Sequence	2.5	PREDICTED: Zea mays Protein CHAPERONE-LIKE PROTEIN OF POR1 chloroplastic (LOC100276880), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001174368.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *=||||||||*=|||||||||||| targets:1445   CUCAAUCUCACUCAAUCCACAUGG   1468 Target Full Sequence	2.5	Zea mays hypothetical protein (LOC100381539), mRNA	NA	coding protein	psRNATarget
BT061560.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *=||||||||*=|||||||||||| targets:1445   CUCAAUCUCACUCAAUCCACAUGG   1468 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0158C09 mRNA, complete cds	NA	coding protein	psRNATarget
EU953075.1	ncRNA:24   AGGUUAGAGUAGGUUAGGUGUACC   1   *=|||||||*|||||||||=|||| targets:1007   AUCAAUCUCCUCCAAUCCAUAUGG   1030 Target Full Sequence	2.5	Zea mays clone 1380292 mRNA sequence	NA	coding protein	psRNATarget