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BaseInfo

ncRNA ID	novel_zma_miR877
Species	Zea mays
Class	miRNA
Genome position	Chr2:174363183-174363264 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089714;SRR2089715;SRR3385651;SRR2089702;SRR2089703;SRR2089705;SRR2089706;SRR2089707
Length	20
Mature sequence(if miRNA)	63 - CGGAGGGGUUGAAGGUGCUA - 82
Stem-loop(if miRNA)	--      -     A   U                -     A   CGGAGG GGUUG AGG GCUAAAAUCCUCUUUU AUUCA U   |||||| ||||| ||| |||||||||||||||| |||||   GCCUCC CUAAC UCC CGAUUUUAGGGGAAAA UAAGU U UG      U     C   U                A     U
Stem-loop sequence	CGGAGGGGUUGAAGGUGCUAAAAUCCUCUUUUAUUCAAUUUUGAAUAAAAAGGGGAUUUUAGCUCCUCCAAUCUCCUCCGGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT062360.1	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   ||||*||||=|||||||||| targets:1455   UAGCCCCUUUAACCCCUCCG   1474 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFb0286E11 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020549837.1	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   ||||*||||=|||||||||| targets:3499   UAGCCCCUUUAACCCCUCCG   3518 Target Full Sequence	2.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X4, mRNA	NA	coding protein	psRNATarget
NM_001321373.1	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   ||||*||||=|||||||||| targets:3743   UAGCCCCUUUAACCCCUCCG   3762 Target Full Sequence	2.5	Zea mays ARM repeat superfamily protein (LOC100381825), mRNA	NA	coding protein	psRNATarget
XM_008674878.2	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   ||||*||||=|||||||||| targets:3705   UAGCCCCUUUAACCCCUCCG   3724 Target Full Sequence	2.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X5, mRNA	NA	coding protein	psRNATarget
XM_008674877.2	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   ||||*||||=|||||||||| targets:3730   UAGCCCCUUUAACCCCUCCG   3749 Target Full Sequence	2.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_008674876.2	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   ||||*||||=|||||||||| targets:3793   UAGCCCCUUUAACCCCUCCG   3812 Target Full Sequence	2.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020549836.1	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   ||||*||||=|||||||||| targets:4541   UAGCCCCUUUAACCCCUCCG   4560 Target Full Sequence	2.5	PREDICTED: Zea mays ARM repeat superfamily protein (LOC100381825), transcript variant X3, mRNA	NA	coding protein	psRNATarget
KC196753.1	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   **|||||||||||=|||||| targets:642   GCGCACCUUCAACUCCUCCG   661 Target Full Sequence	2.5	Zea mays cellulase (Cel6) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001301591.1	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   **|||||||||||=|||||| targets:642   GCGCACCUUCAACUCCUCCG   661 Target Full Sequence	2.5	Zea mays endoglucanase 12-like (LOC103641803), mRNA	NA	coding protein	psRNATarget
XM_008672026.2	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   **|||||||||*|||||||| targets:903   CUGCACCUUCACCCCCUCCG   922 Target Full Sequence	2.5	PREDICTED: Zea mays serine carboxypeptidase II-3 (LOC103647494), mRNA	NA	coding protein	psRNATarget
XM_008652959.2	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   *=*||||||||||||||||* targets:625   CGACACCUUCAACCCCUCCC   644 Target Full Sequence	3.0	PREDICTED: Zea mays AUGMIN subunit 8 (LOC100275573), transcript variant X4, mRNA	NA	coding protein	psRNATarget
BT067409.1	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   *=*||||||||||||||||* targets:508   CGACACCUUCAACCCCUCCC   527 Target Full Sequence	3.0	Zea mays full-length cDNA clone ZM_BFc0040I13 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020540388.1	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   *=*||||||||||||||||* targets:589   CGACACCUUCAACCCCUCCC   608 Target Full Sequence	3.0	PREDICTED: Zea mays AUGMIN subunit 8 (LOC100275573), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008652957.2	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   *=*||||||||||||||||* targets:686   CGACACCUUCAACCCCUCCC   705 Target Full Sequence	3.0	PREDICTED: Zea mays AUGMIN subunit 8 (LOC100275573), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008652958.2	ncRNA:20   AUCGUGGAAGUUGGGGAGGC   1   *=*||||||||||||||||* targets:719   CGACACCUUCAACCCCUCCC   738 Target Full Sequence	3.0	PREDICTED: Zea mays AUGMIN subunit 8 (LOC100275573), transcript variant X2, mRNA	NA	coding protein	psRNATarget