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BaseInfo

ncRNA ID	novel_zma_miR870
Species	Zea mays
Class	miRNA
Genome position	Chr2:208811317-208811366 [-]
Reference genome	RefGen_v4
Source	SRR2089710
Length	22
Mature sequence(if miRNA)	1 - UAACCGUCGUUAUCCUGAGGCA - 22
Stem-loop(if miRNA)	---           C   A  G   A    CUCGGGAUAAC GAC GG UAC A    ||||||||||| ||| || ||| A    GAGUCCUAUUG CUG CC AUG A ACG           -   -  A   U
Stem-loop sequence	CUCGGGAUAACCGACAGGGUACAAAAUGUAACCGUCGUUAUCCUGAGGCA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB169724.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7388 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241432.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7427 from Patent EP2985353	NA	coding protein	psRNATarget
HI409872.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7997 from Patent EP2074227	NA	coding protein	psRNATarget
HI409081.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7206 from Patent EP2074227	NA	coding protein	psRNATarget
JB170301.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7965 from Patent EP2559767	NA	coding protein	psRNATarget
JB169542.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7206 from Patent EP2559767	NA	coding protein	psRNATarget
JB170294.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7958 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241963.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7958 from Patent EP2985353	NA	coding protein	psRNATarget
HI409833.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7958 from Patent EP2074227	NA	coding protein	psRNATarget
LQ240947.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 6942 from Patent EP2985353	NA	coding protein	psRNATarget
JB169278.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 6942 from Patent EP2559767	NA	coding protein	psRNATarget
HI408817.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 6942 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242002.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7997 from Patent EP2985353	NA	coding protein	psRNATarget
JB170333.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7997 from Patent EP2559767	NA	coding protein	psRNATarget
HI409263.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7388 from Patent EP2074227	NA	coding protein	psRNATarget
HI409302.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7427 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241211.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7206 from Patent EP2985353	NA	coding protein	psRNATarget
HI409840.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7965 from Patent EP2074227	NA	coding protein	psRNATarget
JB169763.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7427 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241970.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7965 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241393.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:9   UGCCUCAGGAUAACGAGGGUUA   30 Target Full Sequence	1.5	Sequence 7388 from Patent EP2985353	NA	coding protein	psRNATarget
HI409841.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 7966 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242030.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 8025 from Patent EP2985353	NA	coding protein	psRNATarget
JB169840.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 7504 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241062.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 7057 from Patent EP2985353	NA	coding protein	psRNATarget
LQ241971.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 7966 from Patent EP2985353	NA	coding protein	psRNATarget
HI408932.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 7057 from Patent EP2074227	NA	coding protein	psRNATarget
JB169393.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 7057 from Patent EP2559767	NA	coding protein	psRNATarget
HI409886.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 8011 from Patent EP2074227	NA	coding protein	psRNATarget
HI409379.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 7504 from Patent EP2074227	NA	coding protein	psRNATarget
JB170302.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 7966 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242016.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 8011 from Patent EP2985353	NA	coding protein	psRNATarget
JB170361.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 8025 from Patent EP2559767	NA	coding protein	psRNATarget
JB170347.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 8011 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241509.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 7504 from Patent EP2985353	NA	coding protein	psRNATarget
HI409900.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||||||||||||||||*||||| targets:10   UGCCUCAGGAUAACGAGGGUUA   31 Target Full Sequence	1.5	Sequence 8025 from Patent EP2074227	NA	coding protein	psRNATarget
JB169759.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   |||||||*||||||||*||||| targets:10   UGCCUCAAGAUAACGAGGGUUA   31 Target Full Sequence	2.5	Sequence 7423 from Patent EP2559767	NA	coding protein	psRNATarget
HI409298.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   |||||||*||||||||*||||| targets:10   UGCCUCAAGAUAACGAGGGUUA   31 Target Full Sequence	2.5	Sequence 7423 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241428.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   |||||||*||||||||*||||| targets:10   UGCCUCAAGAUAACGAGGGUUA   31 Target Full Sequence	2.5	Sequence 7423 from Patent EP2985353	NA	coding protein	psRNATarget
HI409678.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||*|||||||||||||*||||| targets:55   UGGCUCAGGAUAACGAGGGUUA   76 Target Full Sequence	1.5	Sequence 7803 from Patent EP2074227	NA	coding protein	psRNATarget
JB170139.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||*|||||||||||||*||||| targets:55   UGGCUCAGGAUAACGAGGGUUA   76 Target Full Sequence	1.5	Sequence 7803 from Patent EP2559767	NA	coding protein	psRNATarget
LQ241808.1	ncRNA:22   ACGGAGUCCUAUUGCUGCCAAU   1   ||*|||||||||||||*||||| targets:55   UGGCUCAGGAUAACGAGGGUUA   76 Target Full Sequence	1.5	Sequence 7803 from Patent EP2985353	NA	coding protein	psRNATarget