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BaseInfo

ncRNA ID osa-miR1862g
Species Oryza sativa
Class miRNA
Genome position Chr4:20340401-20340523 [-]
Reference genome MSU7
Source miRBase
Length 20
Mature sequence(if miRNA) 1 - AUGAGGUUGGUUUAUUUUGG - 20
Stem-loop(if miRNA)            A   A     A    A           A     --         AACACG
CCAAAAUAAAC AAC UCGUG UAGG UGUGACACAUC UAGUA  ACGAGUCUG      U
||||||||||| ||| ||||| |||| ||||||||||| |||||  |||||||||      A
GGUUUUAUUUG UUG AGUAU AUUU ACACUGUGUAG AUUAU  UGCUUAGAC      G
           G   G     G    A           G     GU         CUAUAA
Stem-loop sequence CCAAAAUAAACAAACAUCGUGAUAGGAUGUGACACAUCAUAGUAACGAGUCUGAACACGUAGAAUAUCCAGAUUCGUUGUAUUAGGAUGUGUCACAAUUUAGUAUGAGGUUGGUUUAUUUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK111475.1
ncRNA:20   GGUUUUAUUUGGUUGGAGUA   1
  ||||||||||||||||||||
targets:1264   CCAAAAUAAACCAACCUCAU   1283

0.0 Oryza sativa Japonica Group cDNA clone:002-183-F05, full insert sequence NA coding protein psRNATarget
AK119335.1
ncRNA:20   GGUUUUAUUUGGUUGGAGUA   1
  ||||||||||||||||||||
targets:1094   CCAAAAUAAACCAACCUCAU   1113

0.0 Oryza sativa Japonica Group cDNA clone:001-131-C06, full insert sequence NA coding protein psRNATarget

Reference

1 PMID:21113019
"Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)";
Li T, Li H, Zhang YX, Liu JY;
Nucleic Acids Res. 39:2821-2833(2011).