ncRNA ID | osa-miR1862g |
Species | Oryza sativa |
Class | miRNA |
Genome position | Chr4:20340401-20340523 [-] |
Reference genome | MSU7 |
Source | miRBase |
Length | 20 |
Mature sequence(if miRNA) | 1 - AUGAGGUUGGUUUAUUUUGG - 20 |
Stem-loop(if miRNA) |
           A   A     A    A           A     --         AACACG CCAAAAUAAAC AAC UCGUG UAGG UGUGACACAUC UAGUA  ACGAGUCUG      U ||||||||||| ||| ||||| |||| ||||||||||| |||||  |||||||||      A GGUUUUAUUUG UUG AGUAU AUUU ACACUGUGUAG AUUAU  UGCUUAGAC      G            G   G     G    A           G     GU         CUAUAA |
Stem-loop sequence | CCAAAAUAAACAAACAUCGUGAUAGGAUGUGACACAUCAUAGUAACGAGUCUGAACACGUAGAAUAUCCAGAUUCGUUGUAUUAGGAUGUGUCACAAUUUAGUAUGAGGUUGGUUUAUUUUGG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK111475.1 |
|
0.0 | Oryza sativa Japonica Group cDNA clone:002-183-F05, full insert sequence | NA | coding protein | psRNATarget | |||||||||
AK119335.1 |
|
0.0 | Oryza sativa Japonica Group cDNA clone:001-131-C06, full insert sequence | NA | coding protein | psRNATarget |
1 | PMID:21113019
"Identification and analysis of seven H(2)O(2)-responsive miRNAs and 32 new miRNAs in the seedlings of rice (Oryza sativa L. ssp. indica)"; Li T, Li H, Zhang YX, Liu JY; Nucleic Acids Res. 39:2821-2833(2011). |