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BaseInfo

ncRNA ID	novel_zma_miR866
Species	Zea mays
Class	miRNA
Genome position	Chr5:145476860-145476940 [+]
Reference genome	RefGen_v4
Source	SRR1583941;SRR1583942
Length	21
Mature sequence(if miRNA)	1 - UCUAUCUAGAUUAUAUAAUCU - 21
Stem-loop(if miRNA)	--                          C          A   UCUAUCUAGAUUAUAUAAUCUAAUAA UUUUGAACUA G   |||||||||||||||||||||||||| |||||||||| A   AGGUGGAUCUAAUAUAUUAGGUUGUU AAAACUUGAU G UU                          A          U
Stem-loop sequence	UCUAUCUAGAUUAUAUAAUCUAAUAACUUUUGAACUAAGAGUUAGUUCAAAAAUUGUUGGAUUAUAUAAUCUAGGUGGAUU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008669523.2	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   |||||||||||||||||*||| targets:2108   AGAUUAUAUAAUCUAGACAGA   2128 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC100278420), transcript variant X1, mRNA	NA	coding protein	psRNATarget
AY105541.1	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   |||||||||||||||*||||| targets:2091   AGAUUAUAUAAUCUAAAUAGA   2111 Target Full Sequence	1.5	Zea mays PCO077463 mRNA sequence	NA	coding protein	psRNATarget
XM_008681303.2	ncRNA:21   UCUAAUAUAUUAGAUCUA-UCU   1   =|||||||||||||||||-||| targets:2123   GGAUUAUAUAAUCUAGAUUAGA   2144 Target Full Sequence	3.0	PREDICTED: Zea mays F-box protein At-B (LOC103654475), mRNA	NA	coding protein	psRNATarget
AY105949.1	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   |||||||||||||||||||** targets:539   AGAUUAUAUAAUCUAGAUACC   559 Target Full Sequence	2.5	Zea mays PCO103361 mRNA sequence	NA	coding protein	psRNATarget
EU977031.1	ncRNA:21   UCUAAUAUAUUAGAUCUA-UCU   1   =|||||||||||||||||-||| targets:466   GGAUUAUAUAAUCUAGAUUAGA   487 Target Full Sequence	3.0	Zea mays clone 996758 mRNA sequence	NA	coding protein	psRNATarget
JB167135.1	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   |||||||||||||||||||** targets:85   AGAUUAUAUAAUCUAGAUACC   105 Target Full Sequence	2.5	Sequence 4799 from Patent EP2559767	NA	coding protein	psRNATarget
HI406674.1	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   |||||||||||||||||||** targets:85   AGAUUAUAUAAUCUAGAUACC   105 Target Full Sequence	2.5	Sequence 4799 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238804.1	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   |||||||||||||||||||** targets:85   AGAUUAUAUAAUCUAGAUACC   105 Target Full Sequence	2.5	Sequence 4799 from Patent EP2985353	NA	coding protein	psRNATarget
XM_008657785.2	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   =||||||||||||||*||||| targets:2342   GGAUUAUAUAAUCUAAAUAGA   2362 Target Full Sequence	1.5	PREDICTED: Zea mays LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-like 1.2 (LOC103635294), mRNA	NA	coding protein	psRNATarget
EU949179.1	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   |*||||||||||||||=|||| targets:70   AAAUUAUAUAAUCUAGGUAGA   90 Target Full Sequence	1.5	Zea mays clone 398195 mRNA sequence	NA	coding protein	psRNATarget
EZ078154.1	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   =||||||||||||||*||||| targets:44   GGAUUAUAUAAUCUAUAUAGA   64 Target Full Sequence	1.5	TSA: Zea mays contig13793, mRNA sequence	NA	coding protein	psRNATarget
XM_020547943.1	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   =*|||||||||||||||*||| targets:3414   GAAUUAUAUAAUCUAGACAGA   3434 Target Full Sequence	1.5	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547944.1	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   =*|||||||||||||||*||| targets:3399   GAAUUAUAUAAUCUAGACAGA   3419 Target Full Sequence	1.5	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X2, mRNA	NA	coding protein	psRNATarget
XM_020547945.1	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   =*|||||||||||||||*||| targets:3270   GAAUUAUAUAAUCUAGACAGA   3290 Target Full Sequence	1.5	PREDICTED: Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), transcript variant X3, mRNA	NA	coding protein	psRNATarget
NM_001177200.1	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   =*|||||||||||||||*||| targets:1285   GAAUUAUAUAAUCUAGACAGA   1305 Target Full Sequence	1.5	Zea mays Leucine-rich repeat transmembrane protein kinase (LOC100384732), mRNA	NA	coding protein	psRNATarget
BT084075.1	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   =*|||||||||||||||*||| targets:1285   GAAUUAUAUAAUCUAGACAGA   1305 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0071H15 mRNA, complete cds	NA	coding protein	psRNATarget
EU945446.1	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   **|*||||||||||=|||||| targets:481   CUAAUAUAUAAUCUGGAUAGA   501 Target Full Sequence	2.5	Zea mays clone 273503 mRNA sequence	NA	coding protein	psRNATarget
XM_020543182.1	ncRNA:21   UCUAAUAUAUUAGAUCUAUCU   1   =**|||||||||*|||||||| targets:717   GUUUUAUAUAAUAUAGAUAGA   737 Target Full Sequence	2.5	PREDICTED: Zea mays ras-related protein RABA1f-like (LOC103637397), partial mRNA	NA	coding protein	psRNATarget