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BaseInfo

ncRNA ID	novel_zma_miR862
Species	Zea mays
Class	miRNA
Genome position	Chr2:232648074-232648132 [-]
Reference genome	RefGen_v4
Source	SRR2089710;SRR2089713;SRR2089715;SRR2089701;SRR2089703
Length	24
Mature sequence(if miRNA)	1 - GACGGUCCGCGACCUGGCGCAGAG - 24
Stem-loop(if miRNA)	--   -      -       G    GC       CUG GUCAGG CGCGGAC GUCC  GGCCA   ||| |||||| ||||||| ||||  ||||G   GAC CGGUCC GCGCCUG CAGG  CCGGA GA   G      A       G    --
Stem-loop sequence	CUGGUCAGGCGCGGACGGUCCGCGGCCAGAGGCCGGACGGUCCGCGACCUGGCGCAGAG

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
JB170229.1	ncRNA:24   GAGA-CGCGGUCCAGCGCCUGGCAG   1   ||||-|||||||||||=|||||||| targets:6   CUCUUGCGCCAGGUCGUGGACCGUC   30 Target Full Sequence	1.5	Sequence 7893 from Patent EP2559767	NA	coding protein	psRNATarget
HI409768.1	ncRNA:24   GAGA-CGCGGUCCAGCGCCUGGCAG   1   ||||-|||||||||||=|||||||| targets:6   CUCUUGCGCCAGGUCGUGGACCGUC   30 Target Full Sequence	1.5	Sequence 7893 from Patent EP2074227	NA	coding protein	psRNATarget
LQ241898.1	ncRNA:24   GAGA-CGCGGUCCAGCGCCUGGCAG   1   ||||-|||||||||||=|||||||| targets:6   CUCUUGCGCCAGGUCGUGGACCGUC   30 Target Full Sequence	1.5	Sequence 7893 from Patent EP2985353	NA	coding protein	psRNATarget
HI403079.1	ncRNA:24   GAGACGCGGUCCAGCGCCUGGCAG   1   |*|||||||||||||||||=|||| targets:8   CCCUGCGCCAGGUCGCGGAUCGUC   31 Target Full Sequence	1.5	Sequence 1204 from Patent EP2074227	NA	coding protein	psRNATarget
JB163540.1	ncRNA:24   GAGACGCGGUCCAGCGCCUGGCAG   1   |*|||||||||||||||||=|||| targets:8   CCCUGCGCCAGGUCGCGGAUCGUC   31 Target Full Sequence	1.5	Sequence 1204 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235209.1	ncRNA:24   GAGACGCGGUCCAGCGCCUGGCAG   1   |*|||||||||||||||||=|||| targets:8   CCCUGCGCCAGGUCGCGGAUCGUC   31 Target Full Sequence	1.5	Sequence 1204 from Patent EP2985353	NA	coding protein	psRNATarget
HI406485.1	ncRNA:24   GAGACGCGGUCCAGCGCCUGGCAG   1   ||||||||*|||||||||||=||| targets:48   CUCUGCGCGAGGUCGCGGACUGUC   71 Target Full Sequence	2.5	Sequence 4610 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238615.1	ncRNA:24   GAGACGCGGUCCAGCGCCUGGCAG   1   ||||||||*|||||||||||=||| targets:48   CUCUGCGCGAGGUCGCGGACUGUC   71 Target Full Sequence	2.5	Sequence 4610 from Patent EP2985353	NA	coding protein	psRNATarget
JB166946.1	ncRNA:24   GAGACGCGGUCCAGCGCCUGGCAG   1   ||||||||*|||||||||||=||| targets:48   CUCUGCGCGAGGUCGCGGACUGUC   71 Target Full Sequence	2.5	Sequence 4610 from Patent EP2559767	NA	coding protein	psRNATarget
EZ073491.1	ncRNA:24   GAGACGCGGUCCAGCGCCUGGCAG   1   |*||||||||||||||||||=||| targets:62   CCCUGCGCCAGGUCGCGGACUGUC   85 Target Full Sequence	1.5	TSA: Zea mays contig09128, mRNA sequence	NA	coding protein	psRNATarget
EZ073491.1	ncRNA:24   GAGACGCGGUCCAGCGCCUGGCAG   1   =*|*||*|||||*||||||||||| targets:84   UCCGGCCCCAGGCCGCGGACCGUC   107 Target Full Sequence	2.5	TSA: Zea mays contig09128, mRNA sequence	NA	coding protein	psRNATarget
BT039435.1	ncRNA:24   GAGACGCGGUCCAGCGCCUGGCAG   1   ||||*||||||||=|||||||||| targets:266   CUCUACGCCAGGUUGCGGACCGUC   289 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0013G13 mRNA, complete cds	NA	coding protein	psRNATarget
LQ241452.1	ncRNA:24   GAG-ACGCGGUCCAGCGCCUGGCAG   1   |||-|||||||||||*||||||||| targets:22   CUCCUGCGCCAGGUCACGGACCGUC   46 Target Full Sequence	1.5	Sequence 7447 from Patent EP2985353	NA	coding protein	psRNATarget
HI409322.1	ncRNA:24   GAG-ACGCGGUCCAGCGCCUGGCAG   1   |||-|||||||||||*||||||||| targets:22   CUCCUGCGCCAGGUCACGGACCGUC   46 Target Full Sequence	1.5	Sequence 7447 from Patent EP2074227	NA	coding protein	psRNATarget
JB169783.1	ncRNA:24   GAG-ACGCGGUCCAGCGCCUGGCAG   1   |||-|||||||||||*||||||||| targets:22   CUCCUGCGCCAGGUCACGGACCGUC   46 Target Full Sequence	1.5	Sequence 7447 from Patent EP2559767	NA	coding protein	psRNATarget
EZ096610.1	ncRNA:24   GAGACGCGGUCCAGCGCCUGGCAG   1   *||-|||=|||||||||||||||| targets:58   GUC-GCGUCAGGUCGCGGACCGUC   80 Target Full Sequence	1.0	TSA: Zea mays contig32265, mRNA sequence	NA	coding protein	psRNATarget
BT088349.1	ncRNA:24   GAGACGCGGUCCAGCGCCUGGCAG   1   =||*||*|||||*||||||||||| targets:1187   UUCGGCCCCAGGGCGCGGACCGUC   1210 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0151F11 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001196968.1	ncRNA:24   GAGACGCGGUCCAGCGCCUGGCAG   1   =||*||*|||||*||||||||||| targets:1187   UUCGGCCCCAGGGCGCGGACCGUC   1210 Target Full Sequence	2.5	Zea mays uncharacterized LOC100502490 (LOC100502490), mRNA	NA	coding protein	psRNATarget
XM_020539115.1	ncRNA:24   GAGACGCGGUCCAGCGCCUGGCAG   1   |||-||*|||||*||||||||||| targets:2753   CUC-GCACCAGGCCGCGGACCGUC   2775 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100384241 (gpm299b), transcript variant X7, mRNA	NA	coding protein	psRNATarget