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BaseInfo

ncRNA ID	novel_zma_miR861
Species	Zea mays
Class	miRNA
Genome position	Chr2:239914423-239914484 [-]
Reference genome	RefGen_v4
Source	SRR2089710
Length	24
Mature sequence(if miRNA)	39 - GGGAUUGGAGAGGAUUGAGGUGGA - 62
Stem-loop(if miRNA)	--         GA      AG U      GA   GGGAUUGGA  GGAUUG  G GGAAAU  A   |||||||||  ||||||  | ||||||   CCCUAACUU  UCUAAC  C CCUUUA  C AG         AC      CU U      GU
Stem-loop sequence	GGGAUUGGAGAGGAUUGAGGUGGAAAUGAACUGAUUUCCUCUCCAAUCUCAUUCAAUCCCGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_008672733.2	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |||||||||||||||||||||||| targets:2429   UCCACCUCAAUCCUCUCCAAUCCC   2452 Target Full Sequence	0.0	PREDICTED: Zea mays L-type lectin-domain containing receptor kinase IV.1 (LOC103648246), mRNA	NA	coding protein	psRNATarget
EU942844.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   ||||||||||||||||=||||||| targets:195   UCCACCUCAAUCCUCUUCAAUCCC   218 Target Full Sequence	1.5	Zea mays clone 1540330 mRNA sequence	NA	coding protein	psRNATarget
XM_020539803.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   ||=||||||||||||||||||=|| targets:836   UCUACCUCAAUCCUCUCCAAUUCC   859 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X2, mRNA	NA	coding protein	psRNATarget
NM_001347002.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   ||=||||||||||||||||||=|| targets:1146   UCUACCUCAAUCCUCUCCAAUUCC   1169 Target Full Sequence	1.5	Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), mRNA	NA	coding protein	psRNATarget
XM_008658575.2	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   ||=||||||||||||||||||=|| targets:1158   UCUACCUCAAUCCUCUCCAAUUCC   1181 Target Full Sequence	1.5	PREDICTED: Zea mays uncharacterized protein, chloroplastic-like (LOC103636217), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_008671926.2	ncRNA:24   AGG-UGGAGUUAGGAGAGGUUAGGG   1   |||-|||||||||||||||||||=| targets:1065   UCCUACCUCAAUCCUCUCCAAUCUC   1089 Target Full Sequence	1.5	PREDICTED: Zea mays hypothetical protein (LOC103647382), mRNA	NA	coding protein	psRNATarget
EZ055746.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |=|||||||||||*|||||||||= targets:75   UUCACCUCAAUCCCCUCCAAUCCU   98 Target Full Sequence	2.5	TSA: Zea mays contig56868, mRNA sequence	NA	coding protein	psRNATarget
AY110351.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |=|||||||||||*|||||||||= targets:41   UUCACCUCAAUCCCCUCCAAUCCU   64 Target Full Sequence	2.5	Zea mays CL33021_1 mRNA sequence	NA	coding protein	psRNATarget
HI406392.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |||-||||||||||||||=||||= targets:51   UCC-CCUCAAUCCUCUCCGAUCCU   73 Target Full Sequence	2.5	Sequence 4517 from Patent EP2074227	NA	coding protein	psRNATarget
LQ238522.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |||-||||||||||||||=||||= targets:51   UCC-CCUCAAUCCUCUCCGAUCCU   73 Target Full Sequence	2.5	Sequence 4517 from Patent EP2985353	NA	coding protein	psRNATarget
JB166853.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |||-||||||||||||||=||||= targets:51   UCC-CCUCAAUCCUCUCCGAUCCU   73 Target Full Sequence	2.5	Sequence 4517 from Patent EP2559767	NA	coding protein	psRNATarget
NM_001352049.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |||-||||||||||||||=||||= targets:550   UCC-CCUCAAUCCUCUCCGAUCCU   572 Target Full Sequence	2.5	Zea mays uncharacterized LOC100284194 (pco105859), transcript variant 2, mRNA	NA	coding protein	psRNATarget
XM_020547779.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |||-||||||||||||||=||||= targets:578   UCC-CCUCAAUCCUCUCCGAUCCU   600 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X1, mRNA	NA	coding protein	psRNATarget
XM_020547780.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |||-||||||||||||||=||||= targets:580   UCC-CCUCAAUCCUCUCCGAUCCU   602 Target Full Sequence	2.5	PREDICTED: Zea mays uncharacterized LOC100284194 (pco105859), transcript variant X2, mRNA	NA	coding protein	psRNATarget
JB166594.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   *||||||||||||*|||||||||* targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2559767	NA	coding protein	psRNATarget
LQ238263.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   *||||||||||||*|||||||||* targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2985353	NA	coding protein	psRNATarget
HI406133.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   *||||||||||||*|||||||||* targets:86   ACCACCUCAAUCCACUCCAAUCCG   109 Target Full Sequence	2.5	Sequence 4258 from Patent EP2074227	NA	coding protein	psRNATarget
EU943240.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   *||||||||||||*|||||||||* targets:573   ACCACCUCAAUCCACUCCAAUCCA   596 Target Full Sequence	2.5	Zea mays clone 1589496 mRNA sequence	NA	coding protein	psRNATarget
EU965489.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   *||||||||||||*|||||||||* targets:1111   ACCACCUCAAUCCACUCCAAUCCA   1134 Target Full Sequence	2.5	Zea mays clone 286392 mRNA sequence	NA	coding protein	psRNATarget
XM_008667020.2	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   *||||||||||||*|||||||||* targets:2080   ACCACCUCAAUCCACUCCAAUCCA   2103 Target Full Sequence	2.5	PREDICTED: Zea mays DEAD-box ATP-dependent RNA helicase 27 (LOC103643852), mRNA	NA	coding protein	psRNATarget
JB163954.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |||*|||||||||*|||||||||= targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.5	Sequence 1618 from Patent EP2559767	NA	coding protein	psRNATarget
LQ235623.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |||*|||||||||*|||||||||= targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.5	Sequence 1618 from Patent EP2985353	NA	coding protein	psRNATarget
HI403493.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |||*|||||||||*|||||||||= targets:32   UCCCCCUCAAUCCCCUCCAAUCCU   55 Target Full Sequence	2.5	Sequence 1618 from Patent EP2074227	NA	coding protein	psRNATarget
AY111447.2	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |*||=||||||||*|||||||||| targets:351   UACAUCUCAAUCCACUCCAAUCCC   374 Target Full Sequence	1.5	Zea mays CL859_2 mRNA sequence	NA	coding protein	psRNATarget
BT067545.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |*||=||||||||*|||||||||| targets:1767   UACAUCUCAAUCCACUCCAAUCCC   1790 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFc0086J10 mRNA, complete cds	NA	coding protein	psRNATarget
NM_001137799.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |*||=||||||||*|||||||||| targets:1948   UACAUCUCAAUCCACUCCAAUCCC   1971 Target Full Sequence	1.5	Zea mays putative protein kinase superfamily protein (LOC100192584), mRNA	NA	coding protein	psRNATarget
BT034601.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |*||=||||||||*|||||||||| targets:1948   UACAUCUCAAUCCACUCCAAUCCC   1971 Target Full Sequence	1.5	Zea mays full-length cDNA clone ZM_BFb0002L05 mRNA, complete cds	NA	coding protein	psRNATarget
XM_020547439.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |||*|=|||||||*|||||||||| targets:3911   UCCCCUUCAAUCCACUCCAAUCCC   3934 Target Full Sequence	2.5	PREDICTED: Zea mays hypothetical protein (LOC100194067), transcript variant X1, mRNA	NA	coding protein	psRNATarget
JB163816.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |=|*|||||||||*|||||||||= targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	2.5	Sequence 1480 from Patent EP2559767	NA	coding protein	psRNATarget
HI403355.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |=|*|||||||||*|||||||||= targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	2.5	Sequence 1480 from Patent EP2074227	NA	coding protein	psRNATarget
LQ235485.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |=|*|||||||||*|||||||||= targets:30   UUCUCCUCAAUCCCCUCCAAUCCU   53 Target Full Sequence	2.5	Sequence 1480 from Patent EP2985353	NA	coding protein	psRNATarget
HI405859.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |*||==|||||||*|||||||||| targets:87   UACAUUUCAAUCCACUCCAAUCCC   110 Target Full Sequence	2.5	Sequence 3984 from Patent EP2074227	NA	coding protein	psRNATarget
LQ237989.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |*||==|||||||*|||||||||| targets:87   UACAUUUCAAUCCACUCCAAUCCC   110 Target Full Sequence	2.5	Sequence 3984 from Patent EP2985353	NA	coding protein	psRNATarget
JB166320.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |*||==|||||||*|||||||||| targets:87   UACAUUUCAAUCCACUCCAAUCCC   110 Target Full Sequence	2.5	Sequence 3984 from Patent EP2559767	NA	coding protein	psRNATarget
BT017823.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   *=*=||||||||||||=||||||* targets:852   AUGGCCUCAAUCCUCUUCAAUCCA   875 Target Full Sequence	2.5	Zea mays clone EL01N0508B10.c mRNA sequence	NA	coding protein	psRNATarget
XM_008667123.2	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |*=||||||||||*|||||||||* targets:2376   UGUACCUCAAUCCACUCCAAUCCA   2399 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X3, mRNA	NA	coding protein	psRNATarget
XM_008667124.2	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   |*=||||||||||*|||||||||* targets:2398   UGUACCUCAAUCCACUCCAAUCCA   2421 Target Full Sequence	2.5	PREDICTED: Zea mays pentatricopeptide repeat-containing protein At3g49730 (LOC103643953), transcript variant X4, mRNA	NA	coding protein	psRNATarget
XM_008651631.2	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   *=*=||||||||||||=||||||* targets:3480   AUGGCCUCAAUCCUCUUCAAUCCA   3503 Target Full Sequence	2.5	PREDICTED: Zea mays Topoisomerase II-associated protein PAT1 (LOC103630586), mRNA	NA	coding protein	psRNATarget
BT088155.1	ncRNA:24   AGGUGGAGUUAGGAGAGGUUAGGG   1   ||=*=||||||||*|||||||||= targets:1463   UCUCUCUCAAUCCCCUCCAAUCCU   1486 Target Full Sequence	2.5	Zea mays full-length cDNA clone ZM_BFc0038D09 mRNA, complete cds	NA	coding protein	psRNATarget